Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1822 and GFF1823 are separated by 12 nucleotides GFF1823 and GFF1824 are separated by 15 nucleotides GFF1824 and GFF1825 are separated by 4 nucleotides GFF1825 and GFF1826 are separated by 11 nucleotides
GFF1822 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 687,841 to 688,635
GFF1822
GFF1823 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4), at 688,648 to 689,466
GFF1823
GFF1824 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-), at 689,482 to 690,309
GFF1824
GFF1825 - 5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10), at 690,314 to 690,760
GFF1825
GFF1826 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC 1.13.11.15), at 690,772 to 691,650
GFF1826
Position (kb) 689
690
691 Strain fitness (log2 ratio) -1
0
1
2 at 688.508 kb on + strand, within GFF1822 at 688.508 kb on + strand, within GFF1822 at 688.508 kb on + strand, within GFF1822 at 688.508 kb on + strand, within GFF1822 at 688.508 kb on + strand, within GFF1822 at 688.508 kb on + strand, within GFF1822 at 688.509 kb on - strand, within GFF1822 at 688.509 kb on - strand, within GFF1822 at 688.509 kb on - strand, within GFF1822 at 688.509 kb on - strand, within GFF1822 at 688.548 kb on - strand, within GFF1822 at 688.649 kb on + strand at 688.649 kb on + strand at 688.650 kb on - strand at 688.650 kb on - strand at 688.652 kb on + strand at 688.652 kb on + strand at 688.652 kb on + strand at 688.653 kb on - strand at 688.653 kb on - strand at 688.653 kb on - strand at 688.653 kb on - strand at 688.653 kb on - strand at 688.785 kb on - strand, within GFF1823 at 689.049 kb on - strand, within GFF1823 at 689.381 kb on + strand, within GFF1823 at 689.381 kb on + strand, within GFF1823 at 689.381 kb on + strand, within GFF1823 at 689.382 kb on - strand, within GFF1823 at 689.382 kb on - strand, within GFF1823 at 689.901 kb on - strand, within GFF1824 at 689.901 kb on - strand, within GFF1824 at 689.901 kb on - strand, within GFF1824 at 690.513 kb on + strand, within GFF1825 at 690.514 kb on - strand, within GFF1825 at 690.514 kb on - strand, within GFF1825 at 690.514 kb on - strand, within GFF1825 at 690.526 kb on - strand, within GFF1825 at 690.526 kb on - strand, within GFF1825 at 690.738 kb on + strand at 690.739 kb on - strand at 690.794 kb on + strand at 690.795 kb on - strand at 690.926 kb on + strand, within GFF1826 at 690.927 kb on - strand, within GFF1826 at 690.927 kb on - strand, within GFF1826 at 690.927 kb on - strand, within GFF1826 at 690.927 kb on - strand, within GFF1826 at 691.001 kb on + strand, within GFF1826 at 691.001 kb on + strand, within GFF1826 at 691.002 kb on - strand, within GFF1826 at 691.181 kb on + strand, within GFF1826 at 691.181 kb on + strand, within GFF1826 at 691.182 kb on - strand, within GFF1826 at 691.182 kb on - strand, within GFF1826 at 691.298 kb on + strand, within GFF1826 at 691.298 kb on + strand, within GFF1826 at 691.299 kb on - strand, within GFF1826 at 691.299 kb on - strand, within GFF1826
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 688,508 + GFF1822 0.84 +0.5 688,508 + GFF1822 0.84 +1.8 688,508 + GFF1822 0.84 +0.8 688,508 + GFF1822 0.84 +0.2 688,508 + GFF1822 0.84 -1.0 688,508 + GFF1822 0.84 +0.8 688,509 - GFF1822 0.84 +0.0 688,509 - GFF1822 0.84 +0.6 688,509 - GFF1822 0.84 -0.1 688,509 - GFF1822 0.84 +0.5 688,548 - GFF1822 0.89 +1.4 688,649 + +1.0 688,649 + +0.7 688,650 - -0.0 688,650 - -1.1 688,652 + -1.3 688,652 + -0.1 688,652 + -0.0 688,653 - -0.8 688,653 - -0.1 688,653 - +0.3 688,653 - -0.2 688,653 - +0.3 688,785 - GFF1823 0.17 +0.0 689,049 - GFF1823 0.49 -0.1 689,381 + GFF1823 0.89 +1.1 689,381 + GFF1823 0.89 -1.1 689,381 + GFF1823 0.89 -1.0 689,382 - GFF1823 0.90 -1.0 689,382 - GFF1823 0.90 -0.3 689,901 - GFF1824 0.51 +0.9 689,901 - GFF1824 0.51 +0.3 689,901 - GFF1824 0.51 +0.8 690,513 + GFF1825 0.45 +0.1 690,514 - GFF1825 0.45 +2.0 690,514 - GFF1825 0.45 -0.2 690,514 - GFF1825 0.45 -0.0 690,526 - GFF1825 0.47 +0.3 690,526 - GFF1825 0.47 -1.0 690,738 + +0.1 690,739 - +0.9 690,794 + -0.9 690,795 - +0.0 690,926 + GFF1826 0.18 +0.2 690,927 - GFF1826 0.18 -0.6 690,927 - GFF1826 0.18 -0.4 690,927 - GFF1826 0.18 +0.9 690,927 - GFF1826 0.18 -0.0 691,001 + GFF1826 0.26 +2.4 691,001 + GFF1826 0.26 -1.0 691,002 - GFF1826 0.26 -1.3 691,181 + GFF1826 0.47 +0.2 691,181 + GFF1826 0.47 +0.3 691,182 - GFF1826 0.47 +0.3 691,182 - GFF1826 0.47 +0.5 691,298 + GFF1826 0.60 +1.4 691,298 + GFF1826 0.60 -0.1 691,299 - GFF1826 0.60 -0.7 691,299 - GFF1826 0.60 +0.4
Or see this region's nucleotide sequence