Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1819 and GFF1820 are separated by 38 nucleotides GFF1820 and GFF1821 overlap by 12 nucleotides GFF1821 and GFF1822 are separated by 4 nucleotides GFF1822 and GFF1823 are separated by 12 nucleotides
GFF1819 - MaoC-like dehydratase, at 685,696 to 686,181
GFF1819
GFF1820 - Multiple antibiotic resistance protein marC, at 686,220 to 686,840
GFF1820
GFF1821 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 686,829 to 687,836
GFF1821
GFF1822 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 687,841 to 688,635
GFF1822
GFF1823 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4), at 688,648 to 689,466
GFF1823
Position (kb) 686
687
688 Strain fitness (log2 ratio) -2
-1
0
1
2 at 686.144 kb on - strand at 686.179 kb on + strand at 686.179 kb on + strand at 686.292 kb on + strand, within GFF1820 at 686.292 kb on + strand, within GFF1820 at 686.292 kb on + strand, within GFF1820 at 686.610 kb on + strand, within GFF1820 at 686.610 kb on + strand, within GFF1820 at 686.658 kb on + strand, within GFF1820 at 686.845 kb on + strand at 687.209 kb on - strand, within GFF1821 at 687.209 kb on - strand, within GFF1821 at 687.852 kb on - strand at 687.852 kb on - strand at 688.187 kb on + strand, within GFF1822 at 688.187 kb on + strand, within GFF1822 at 688.188 kb on - strand, within GFF1822 at 688.188 kb on - strand, within GFF1822 at 688.217 kb on + strand, within GFF1822 at 688.218 kb on - strand, within GFF1822 at 688.427 kb on + strand, within GFF1822 at 688.427 kb on + strand, within GFF1822 at 688.427 kb on + strand, within GFF1822 at 688.428 kb on - strand, within GFF1822 at 688.428 kb on - strand, within GFF1822 at 688.428 kb on - strand, within GFF1822 at 688.508 kb on + strand, within GFF1822 at 688.508 kb on + strand, within GFF1822 at 688.508 kb on + strand, within GFF1822 at 688.508 kb on + strand, within GFF1822 at 688.508 kb on + strand, within GFF1822 at 688.508 kb on + strand, within GFF1822 at 688.509 kb on - strand, within GFF1822 at 688.509 kb on - strand, within GFF1822 at 688.509 kb on - strand, within GFF1822 at 688.509 kb on - strand, within GFF1822 at 688.548 kb on - strand, within GFF1822 at 688.649 kb on + strand at 688.649 kb on + strand at 688.650 kb on - strand at 688.650 kb on - strand at 688.652 kb on + strand at 688.652 kb on + strand at 688.652 kb on + strand at 688.653 kb on - strand at 688.653 kb on - strand at 688.653 kb on - strand at 688.653 kb on - strand at 688.653 kb on - strand at 688.785 kb on - strand, within GFF1823
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 686,144 - +1.1 686,179 + +0.1 686,179 + -0.3 686,292 + GFF1820 0.12 +0.2 686,292 + GFF1820 0.12 +1.6 686,292 + GFF1820 0.12 -1.0 686,610 + GFF1820 0.63 +0.0 686,610 + GFF1820 0.63 +1.4 686,658 + GFF1820 0.71 -1.3 686,845 + -0.5 687,209 - GFF1821 0.38 +0.6 687,209 - GFF1821 0.38 +0.5 687,852 - -0.6 687,852 - -0.6 688,187 + GFF1822 0.44 +0.7 688,187 + GFF1822 0.44 +0.4 688,188 - GFF1822 0.44 +0.4 688,188 - GFF1822 0.44 -1.8 688,217 + GFF1822 0.47 +0.0 688,218 - GFF1822 0.47 +0.6 688,427 + GFF1822 0.74 +0.8 688,427 + GFF1822 0.74 +0.2 688,427 + GFF1822 0.74 +0.0 688,428 - GFF1822 0.74 +0.1 688,428 - GFF1822 0.74 +0.2 688,428 - GFF1822 0.74 +2.4 688,508 + GFF1822 0.84 +0.5 688,508 + GFF1822 0.84 +1.8 688,508 + GFF1822 0.84 +0.8 688,508 + GFF1822 0.84 +0.2 688,508 + GFF1822 0.84 -1.0 688,508 + GFF1822 0.84 +0.8 688,509 - GFF1822 0.84 +0.0 688,509 - GFF1822 0.84 +0.6 688,509 - GFF1822 0.84 -0.1 688,509 - GFF1822 0.84 +0.5 688,548 - GFF1822 0.89 +1.4 688,649 + +1.0 688,649 + +0.7 688,650 - -0.0 688,650 - -1.1 688,652 + -1.3 688,652 + -0.1 688,652 + -0.0 688,653 - -0.8 688,653 - -0.1 688,653 - +0.3 688,653 - -0.2 688,653 - +0.3 688,785 - GFF1823 0.17 +0.0
Or see this region's nucleotide sequence