Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1733 and GFF1734 are separated by 14 nucleotides GFF1734 and GFF1735 are separated by 7 nucleotides GFF1735 and GFF1736 are separated by 21 nucleotides
GFF1733 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 587,297 to 588,046
GFF1733
GFF1734 - Histidinol-phosphatase (EC 3.1.3.15), at 588,061 to 588,645
GFF1734
GFF1735 - Glycyl-tRNA synthetase beta chain (EC 6.1.1.14), at 588,653 to 590,767
GFF1735
GFF1736 - Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14), at 590,789 to 591,757
GFF1736
Position (kb) 588
589
590
591 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.715 kb on + strand, within GFF1733 at 587.716 kb on - strand, within GFF1733 at 587.716 kb on - strand, within GFF1733 at 587.716 kb on - strand, within GFF1733 at 587.716 kb on - strand, within GFF1733 at 587.716 kb on - strand, within GFF1733 at 587.739 kb on + strand, within GFF1733 at 587.739 kb on + strand, within GFF1733 at 587.739 kb on + strand, within GFF1733 at 587.739 kb on + strand, within GFF1733 at 587.739 kb on + strand, within GFF1733 at 587.739 kb on + strand, within GFF1733 at 587.740 kb on - strand, within GFF1733 at 587.740 kb on - strand, within GFF1733 at 587.740 kb on - strand, within GFF1733 at 587.740 kb on - strand, within GFF1733 at 587.740 kb on - strand, within GFF1733 at 587.740 kb on - strand, within GFF1733 at 587.825 kb on - strand, within GFF1733 at 587.928 kb on + strand, within GFF1733 at 587.928 kb on + strand, within GFF1733 at 587.928 kb on + strand, within GFF1733 at 587.928 kb on + strand, within GFF1733 at 587.928 kb on + strand, within GFF1733 at 587.928 kb on + strand, within GFF1733 at 587.928 kb on + strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 587.929 kb on - strand, within GFF1733 at 588.590 kb on + strand at 588.590 kb on + strand at 588.591 kb on - strand at 588.591 kb on - strand at 588.591 kb on - strand at 588.591 kb on - strand at 588.591 kb on - strand at 588.591 kb on - strand at 588.591 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 587,715 + GFF1733 0.56 -1.1 587,715 + GFF1733 0.56 -0.4 587,715 + GFF1733 0.56 +0.1 587,715 + GFF1733 0.56 +0.3 587,715 + GFF1733 0.56 +0.9 587,715 + GFF1733 0.56 +0.4 587,715 + GFF1733 0.56 +0.4 587,715 + GFF1733 0.56 -1.4 587,715 + GFF1733 0.56 -0.4 587,715 + GFF1733 0.56 -0.2 587,715 + GFF1733 0.56 -0.7 587,715 + GFF1733 0.56 -0.8 587,716 - GFF1733 0.56 +0.4 587,716 - GFF1733 0.56 -0.7 587,716 - GFF1733 0.56 -1.2 587,716 - GFF1733 0.56 +0.8 587,716 - GFF1733 0.56 -0.3 587,739 + GFF1733 0.59 -0.8 587,739 + GFF1733 0.59 +0.0 587,739 + GFF1733 0.59 -1.3 587,739 + GFF1733 0.59 +0.4 587,739 + GFF1733 0.59 -1.4 587,739 + GFF1733 0.59 -0.1 587,740 - GFF1733 0.59 +1.7 587,740 - GFF1733 0.59 -0.4 587,740 - GFF1733 0.59 +0.0 587,740 - GFF1733 0.59 +1.0 587,740 - GFF1733 0.59 -1.2 587,740 - GFF1733 0.59 -3.3 587,825 - GFF1733 0.70 -0.8 587,928 + GFF1733 0.84 +0.0 587,928 + GFF1733 0.84 -0.2 587,928 + GFF1733 0.84 -1.3 587,928 + GFF1733 0.84 -1.0 587,928 + GFF1733 0.84 -0.3 587,928 + GFF1733 0.84 -0.6 587,928 + GFF1733 0.84 -2.2 587,929 - GFF1733 0.84 -0.5 587,929 - GFF1733 0.84 +2.9 587,929 - GFF1733 0.84 -0.8 587,929 - GFF1733 0.84 -0.7 587,929 - GFF1733 0.84 -1.0 587,929 - GFF1733 0.84 +0.8 587,929 - GFF1733 0.84 -0.3 587,929 - GFF1733 0.84 +0.8 588,590 + +0.8 588,590 + +0.4 588,591 - +0.0 588,591 - +0.1 588,591 - +0.2 588,591 - +0.4 588,591 - +0.2 588,591 - +0.6 588,591 - +0.7
Or see this region's nucleotide sequence