Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1607

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1605 and GFF1606 are separated by 43 nucleotidesGFF1606 and GFF1607 are separated by 15 nucleotidesGFF1607 and GFF1608 are separated by 62 nucleotidesGFF1608 and GFF1609 are separated by 37 nucleotides GFF1605 - Ankyrin, at 460,688 to 461,344 GFF1605 GFF1606 - Transcriptional regulator, LysR family, at 461,388 to 462,275 GFF1606 GFF1607 - putative cyclase, at 462,291 to 463,271 GFF1607 GFF1608 - Transcriptional regulator, TetR family, at 463,334 to 463,951 GFF1608 GFF1609 - Regulator of competence-specific genes, at 463,989 to 464,345 GFF1609 Position (kb) 462 463 464Strain fitness (log2 ratio) -3 -2 -1 0 1at 461.358 kb on + strandat 461.358 kb on + strandat 461.359 kb on - strandat 461.359 kb on - strandat 461.359 kb on - strandat 461.359 kb on - strandat 461.359 kb on - strandat 461.359 kb on - strandat 461.393 kb on - strandat 461.626 kb on - strand, within GFF1606at 461.826 kb on + strand, within GFF1606at 462.189 kb on + strandat 462.189 kb on + strandat 462.189 kb on + strandat 462.190 kb on - strandat 462.190 kb on - strandat 462.269 kb on + strandat 462.269 kb on + strandat 462.269 kb on + strandat 462.269 kb on + strandat 462.270 kb on + strandat 462.270 kb on - strandat 462.270 kb on - strandat 462.270 kb on - strandat 462.273 kb on + strandat 462.273 kb on + strandat 462.273 kb on + strandat 462.273 kb on + strandat 462.273 kb on + strandat 462.274 kb on - strandat 462.409 kb on + strand, within GFF1607at 462.409 kb on + strand, within GFF1607at 462.409 kb on + strand, within GFF1607at 462.409 kb on + strand, within GFF1607at 462.410 kb on - strand, within GFF1607at 462.410 kb on - strand, within GFF1607at 462.410 kb on - strand, within GFF1607at 462.410 kb on - strand, within GFF1607at 462.539 kb on - strand, within GFF1607at 462.539 kb on - strand, within GFF1607at 462.539 kb on - strand, within GFF1607at 462.670 kb on + strand, within GFF1607at 462.671 kb on - strand, within GFF1607at 462.671 kb on - strand, within GFF1607at 462.685 kb on + strand, within GFF1607at 462.686 kb on - strand, within GFF1607at 462.955 kb on + strand, within GFF1607at 462.955 kb on + strand, within GFF1607at 462.955 kb on + strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 463.000 kb on + strand, within GFF1607at 463.000 kb on + strand, within GFF1607at 463.000 kb on + strand, within GFF1607at 463.001 kb on - strand, within GFF1607at 463.001 kb on - strand, within GFF1607at 463.001 kb on - strand, within GFF1607at 463.001 kb on - strand, within GFF1607at 463.034 kb on - strand, within GFF1607at 463.034 kb on - strand, within GFF1607at 463.034 kb on - strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.065 kb on - strand, within GFF1607at 463.189 kb on + strandat 463.189 kb on + strandat 463.189 kb on + strandat 463.190 kb on - strandat 463.190 kb on - strandat 463.330 kb on + strandat 463.407 kb on + strand, within GFF1608at 463.407 kb on + strand, within GFF1608at 463.408 kb on - strand, within GFF1608at 463.408 kb on - strand, within GFF1608at 463.408 kb on - strand, within GFF1608at 463.797 kb on + strand, within GFF1608at 463.798 kb on - strand, within GFF1608at 463.798 kb on - strand, within GFF1608at 463.801 kb on - strand, within GFF1608at 463.801 kb on - strand, within GFF1608at 463.807 kb on - strand, within GFF1608at 463.807 kb on - strand, within GFF1608at 463.807 kb on - strand, within GFF1608at 463.807 kb on - strand, within GFF1608at 463.807 kb on - strand, within GFF1608at 463.977 kb on + strandat 463.977 kb on + strandat 464.229 kb on + strand, within GFF1609at 464.230 kb on - strand, within GFF1609at 464.230 kb on - strand, within GFF1609at 464.230 kb on - strand, within GFF1609

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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461,358 + -3.2
461,358 + -0.2
461,359 - +0.5
461,359 - +0.0
461,359 - -0.0
461,359 - +1.2
461,359 - -1.5
461,359 - -0.0
461,393 - +0.9
461,626 - GFF1606 0.27 +0.4
461,826 + GFF1606 0.49 +1.3
462,189 + +0.2
462,189 + +0.3
462,189 + -0.3
462,190 - +1.1
462,190 - +1.3
462,269 + +1.3
462,269 + +0.6
462,269 + -1.3
462,269 + +0.5
462,270 + +0.7
462,270 - -0.4
462,270 - +0.9
462,270 - +0.1
462,273 + +0.7
462,273 + +0.1
462,273 + -0.7
462,273 + +0.9
462,273 + -1.6
462,274 - +0.1
462,409 + GFF1607 0.12 +1.3
462,409 + GFF1607 0.12 +1.5
462,409 + GFF1607 0.12 -0.3
462,409 + GFF1607 0.12 -0.8
462,410 - GFF1607 0.12 -1.7
462,410 - GFF1607 0.12 -0.7
462,410 - GFF1607 0.12 -0.7
462,410 - GFF1607 0.12 +0.0
462,539 - GFF1607 0.25 -0.7
462,539 - GFF1607 0.25 -0.3
462,539 - GFF1607 0.25 -0.2
462,670 + GFF1607 0.39 +1.2
462,671 - GFF1607 0.39 -1.3
462,671 - GFF1607 0.39 -0.3
462,685 + GFF1607 0.40 -0.2
462,686 - GFF1607 0.40 -1.2
462,955 + GFF1607 0.68 +0.1
462,955 + GFF1607 0.68 +1.6
462,955 + GFF1607 0.68 -2.5
462,956 - GFF1607 0.68 -0.1
462,956 - GFF1607 0.68 +0.3
462,956 - GFF1607 0.68 -0.4
462,956 - GFF1607 0.68 -0.6
462,956 - GFF1607 0.68 +1.1
462,956 - GFF1607 0.68 +0.2
462,956 - GFF1607 0.68 -0.2
463,000 + GFF1607 0.72 +0.2
463,000 + GFF1607 0.72 +1.6
463,000 + GFF1607 0.72 -0.3
463,001 - GFF1607 0.72 -0.1
463,001 - GFF1607 0.72 +0.2
463,001 - GFF1607 0.72 -0.9
463,001 - GFF1607 0.72 -0.2
463,034 - GFF1607 0.76 -0.3
463,034 - GFF1607 0.76 -0.5
463,034 - GFF1607 0.76 +0.1
463,051 + GFF1607 0.77 +0.4
463,051 + GFF1607 0.77 +0.5
463,051 + GFF1607 0.77 +0.4
463,051 + GFF1607 0.77 +0.1
463,051 + GFF1607 0.77 +0.8
463,051 + GFF1607 0.77 -0.3
463,051 + GFF1607 0.77 -0.4
463,052 - GFF1607 0.78 +0.0
463,052 - GFF1607 0.78 +0.6
463,052 - GFF1607 0.78 +0.6
463,052 - GFF1607 0.78 +0.1
463,052 - GFF1607 0.78 -1.9
463,052 - GFF1607 0.78 +0.2
463,052 - GFF1607 0.78 +0.4
463,065 - GFF1607 0.79 -1.5
463,189 + +0.4
463,189 + -0.3
463,189 + -0.6
463,190 - -0.9
463,190 - +0.6
463,330 + -1.0
463,407 + GFF1608 0.12 +1.1
463,407 + GFF1608 0.12 +0.7
463,408 - GFF1608 0.12 -0.6
463,408 - GFF1608 0.12 -2.3
463,408 - GFF1608 0.12 -0.3
463,797 + GFF1608 0.75 +0.0
463,798 - GFF1608 0.75 -0.5
463,798 - GFF1608 0.75 +0.1
463,801 - GFF1608 0.76 +0.3
463,801 - GFF1608 0.76 -0.9
463,807 - GFF1608 0.77 +0.2
463,807 - GFF1608 0.77 +1.3
463,807 - GFF1608 0.77 +0.7
463,807 - GFF1608 0.77 +0.2
463,807 - GFF1608 0.77 +0.7
463,977 + +0.7
463,977 + +0.0
464,229 + GFF1609 0.67 -0.4
464,230 - GFF1609 0.68 -3.1
464,230 - GFF1609 0.68 +0.9
464,230 - GFF1609 0.68 +0.4

Or see this region's nucleotide sequence