Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1606

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1604 and GFF1605 overlap by 4 nucleotidesGFF1605 and GFF1606 are separated by 43 nucleotidesGFF1606 and GFF1607 are separated by 15 nucleotides GFF1604 - Probable deaminase, at 460,227 to 460,691 GFF1604 GFF1605 - Ankyrin, at 460,688 to 461,344 GFF1605 GFF1606 - Transcriptional regulator, LysR family, at 461,388 to 462,275 GFF1606 GFF1607 - putative cyclase, at 462,291 to 463,271 GFF1607 Position (kb) 461 462 463Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 460.388 kb on - strand, within GFF1604at 460.388 kb on - strand, within GFF1604at 460.393 kb on + strand, within GFF1604at 460.393 kb on + strand, within GFF1604at 460.393 kb on + strand, within GFF1604at 460.393 kb on + strand, within GFF1604at 460.394 kb on - strand, within GFF1604at 460.394 kb on - strand, within GFF1604at 460.394 kb on - strand, within GFF1604at 460.394 kb on - strand, within GFF1604at 460.394 kb on - strand, within GFF1604at 460.462 kb on + strand, within GFF1604at 460.462 kb on + strand, within GFF1604at 460.463 kb on - strand, within GFF1604at 460.463 kb on - strand, within GFF1604at 460.463 kb on - strand, within GFF1604at 460.828 kb on - strand, within GFF1605at 460.828 kb on - strand, within GFF1605at 460.962 kb on - strand, within GFF1605at 460.981 kb on - strand, within GFF1605at 461.058 kb on + strand, within GFF1605at 461.058 kb on + strand, within GFF1605at 461.058 kb on + strand, within GFF1605at 461.058 kb on + strand, within GFF1605at 461.059 kb on - strand, within GFF1605at 461.059 kb on - strand, within GFF1605at 461.059 kb on - strand, within GFF1605at 461.064 kb on + strand, within GFF1605at 461.065 kb on - strand, within GFF1605at 461.065 kb on - strand, within GFF1605at 461.197 kb on - strand, within GFF1605at 461.358 kb on + strandat 461.358 kb on + strandat 461.359 kb on - strandat 461.359 kb on - strandat 461.359 kb on - strandat 461.359 kb on - strandat 461.359 kb on - strandat 461.359 kb on - strandat 461.393 kb on - strandat 461.626 kb on - strand, within GFF1606at 461.826 kb on + strand, within GFF1606at 462.189 kb on + strandat 462.189 kb on + strandat 462.189 kb on + strandat 462.190 kb on - strandat 462.190 kb on - strandat 462.269 kb on + strandat 462.269 kb on + strandat 462.269 kb on + strandat 462.269 kb on + strandat 462.270 kb on + strandat 462.270 kb on - strandat 462.270 kb on - strandat 462.270 kb on - strandat 462.273 kb on + strandat 462.273 kb on + strandat 462.273 kb on + strandat 462.273 kb on + strandat 462.273 kb on + strandat 462.274 kb on - strandat 462.409 kb on + strand, within GFF1607at 462.409 kb on + strand, within GFF1607at 462.409 kb on + strand, within GFF1607at 462.409 kb on + strand, within GFF1607at 462.410 kb on - strand, within GFF1607at 462.410 kb on - strand, within GFF1607at 462.410 kb on - strand, within GFF1607at 462.410 kb on - strand, within GFF1607at 462.539 kb on - strand, within GFF1607at 462.539 kb on - strand, within GFF1607at 462.539 kb on - strand, within GFF1607at 462.670 kb on + strand, within GFF1607at 462.671 kb on - strand, within GFF1607at 462.671 kb on - strand, within GFF1607at 462.685 kb on + strand, within GFF1607at 462.686 kb on - strand, within GFF1607at 462.955 kb on + strand, within GFF1607at 462.955 kb on + strand, within GFF1607at 462.955 kb on + strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 463.000 kb on + strand, within GFF1607at 463.000 kb on + strand, within GFF1607at 463.000 kb on + strand, within GFF1607at 463.001 kb on - strand, within GFF1607at 463.001 kb on - strand, within GFF1607at 463.001 kb on - strand, within GFF1607at 463.001 kb on - strand, within GFF1607at 463.034 kb on - strand, within GFF1607at 463.034 kb on - strand, within GFF1607at 463.034 kb on - strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.065 kb on - strand, within GFF1607at 463.189 kb on + strandat 463.189 kb on + strandat 463.189 kb on + strandat 463.190 kb on - strandat 463.190 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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460,388 - GFF1604 0.35 +0.3
460,388 - GFF1604 0.35 +0.6
460,393 + GFF1604 0.36 -0.2
460,393 + GFF1604 0.36 +0.4
460,393 + GFF1604 0.36 +1.9
460,393 + GFF1604 0.36 -1.8
460,394 - GFF1604 0.36 -0.1
460,394 - GFF1604 0.36 -1.5
460,394 - GFF1604 0.36 +0.3
460,394 - GFF1604 0.36 -0.3
460,394 - GFF1604 0.36 +0.1
460,462 + GFF1604 0.51 -0.3
460,462 + GFF1604 0.51 +1.0
460,463 - GFF1604 0.51 -1.1
460,463 - GFF1604 0.51 +1.3
460,463 - GFF1604 0.51 +0.5
460,828 - GFF1605 0.21 -2.0
460,828 - GFF1605 0.21 +0.3
460,962 - GFF1605 0.42 +0.1
460,981 - GFF1605 0.45 -0.9
461,058 + GFF1605 0.56 -0.1
461,058 + GFF1605 0.56 -0.5
461,058 + GFF1605 0.56 -1.1
461,058 + GFF1605 0.56 +2.1
461,059 - GFF1605 0.56 -2.2
461,059 - GFF1605 0.56 +1.5
461,059 - GFF1605 0.56 -0.3
461,064 + GFF1605 0.57 +0.0
461,065 - GFF1605 0.57 +0.3
461,065 - GFF1605 0.57 +0.5
461,197 - GFF1605 0.77 -0.0
461,358 + -3.2
461,358 + -0.2
461,359 - +0.5
461,359 - +0.0
461,359 - -0.0
461,359 - +1.2
461,359 - -1.5
461,359 - -0.0
461,393 - +0.9
461,626 - GFF1606 0.27 +0.4
461,826 + GFF1606 0.49 +1.3
462,189 + +0.2
462,189 + +0.3
462,189 + -0.3
462,190 - +1.1
462,190 - +1.3
462,269 + +1.3
462,269 + +0.6
462,269 + -1.3
462,269 + +0.5
462,270 + +0.7
462,270 - -0.4
462,270 - +0.9
462,270 - +0.1
462,273 + +0.7
462,273 + +0.1
462,273 + -0.7
462,273 + +0.9
462,273 + -1.6
462,274 - +0.1
462,409 + GFF1607 0.12 +1.3
462,409 + GFF1607 0.12 +1.5
462,409 + GFF1607 0.12 -0.3
462,409 + GFF1607 0.12 -0.8
462,410 - GFF1607 0.12 -1.7
462,410 - GFF1607 0.12 -0.7
462,410 - GFF1607 0.12 -0.7
462,410 - GFF1607 0.12 +0.0
462,539 - GFF1607 0.25 -0.7
462,539 - GFF1607 0.25 -0.3
462,539 - GFF1607 0.25 -0.2
462,670 + GFF1607 0.39 +1.2
462,671 - GFF1607 0.39 -1.3
462,671 - GFF1607 0.39 -0.3
462,685 + GFF1607 0.40 -0.2
462,686 - GFF1607 0.40 -1.2
462,955 + GFF1607 0.68 +0.1
462,955 + GFF1607 0.68 +1.6
462,955 + GFF1607 0.68 -2.5
462,956 - GFF1607 0.68 -0.1
462,956 - GFF1607 0.68 +0.3
462,956 - GFF1607 0.68 -0.4
462,956 - GFF1607 0.68 -0.6
462,956 - GFF1607 0.68 +1.1
462,956 - GFF1607 0.68 +0.2
462,956 - GFF1607 0.68 -0.2
463,000 + GFF1607 0.72 +0.2
463,000 + GFF1607 0.72 +1.6
463,000 + GFF1607 0.72 -0.3
463,001 - GFF1607 0.72 -0.1
463,001 - GFF1607 0.72 +0.2
463,001 - GFF1607 0.72 -0.9
463,001 - GFF1607 0.72 -0.2
463,034 - GFF1607 0.76 -0.3
463,034 - GFF1607 0.76 -0.5
463,034 - GFF1607 0.76 +0.1
463,051 + GFF1607 0.77 +0.4
463,051 + GFF1607 0.77 +0.5
463,051 + GFF1607 0.77 +0.4
463,051 + GFF1607 0.77 +0.1
463,051 + GFF1607 0.77 +0.8
463,051 + GFF1607 0.77 -0.3
463,051 + GFF1607 0.77 -0.4
463,052 - GFF1607 0.78 +0.0
463,052 - GFF1607 0.78 +0.6
463,052 - GFF1607 0.78 +0.6
463,052 - GFF1607 0.78 +0.1
463,052 - GFF1607 0.78 -1.9
463,052 - GFF1607 0.78 +0.2
463,052 - GFF1607 0.78 +0.4
463,065 - GFF1607 0.79 -1.5
463,189 + +0.4
463,189 + -0.3
463,189 + -0.6
463,190 - -0.9
463,190 - +0.6

Or see this region's nucleotide sequence