Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1540 and GFF1541 are separated by 10 nucleotides GFF1541 and GFF1542 are separated by 1 nucleotides GFF1542 and GFF1543 overlap by 4 nucleotides
GFF1540 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 395,011 to 395,880
GFF1540
GFF1541 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 395,891 to 396,658
GFF1541
GFF1542 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 396,660 to 397,466
GFF1542
GFF1543 - Beta-lactamase-like, at 397,463 to 398,365
GFF1543
Position (kb) 396
397
398 Strain fitness (log2 ratio) -1
0
1 at 395.834 kb on + strand at 396.331 kb on - strand, within GFF1541 at 396.706 kb on + strand at 396.839 kb on - strand, within GFF1542 at 396.839 kb on - strand, within GFF1542 at 397.190 kb on - strand, within GFF1542 at 397.932 kb on + strand, within GFF1543 at 398.025 kb on + strand, within GFF1543 at 398.026 kb on - strand, within GFF1543 at 398.026 kb on - strand, within GFF1543 at 398.073 kb on + strand, within GFF1543 at 398.283 kb on + strand at 398.283 kb on + strand at 398.283 kb on + strand at 398.316 kb on + strand at 398.442 kb on + strand at 398.442 kb on + strand at 398.443 kb on - strand at 398.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 395,834 + -0.6 396,331 - GFF1541 0.57 +1.7 396,706 + -0.1 396,839 - GFF1542 0.22 +0.4 396,839 - GFF1542 0.22 +0.7 397,190 - GFF1542 0.66 +1.7 397,932 + GFF1543 0.52 +0.4 398,025 + GFF1543 0.62 +0.0 398,026 - GFF1543 0.62 +1.0 398,026 - GFF1543 0.62 -0.5 398,073 + GFF1543 0.68 -0.5 398,283 + -1.3 398,283 + +0.9 398,283 + -0.7 398,316 + +0.6 398,442 + +0.0 398,442 + +0.3 398,443 - -0.0 398,443 - -1.4
Or see this region's nucleotide sequence