Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1527 and GFF1528 overlap by 4 nucleotides GFF1528 and GFF1529 overlap by 33 nucleotides GFF1529 and GFF1530 overlap by 4 nucleotides GFF1530 and GFF1531 are separated by 96 nucleotides
GFF1527 - Tricarboxylate transport protein TctC, at 382,983 to 383,945
GFF1527
GFF1528 - hypothetical protein, at 383,942 to 384,085
GFF1528
GFF1529 - Putative transcriptional regulator, at 384,053 to 384,970
GFF1529
GFF1530 - HTH-type transcriptional regulator IlvY, at 384,967 to 385,863
GFF1530
GFF1531 - putative exported protein, at 385,960 to 386,955
GFF1531
Position (kb) 384
385 Strain fitness (log2 ratio) -2
-1
0
1 at 383.485 kb on + strand, within GFF1527 at 383.486 kb on - strand, within GFF1527 at 383.486 kb on - strand, within GFF1527 at 383.639 kb on - strand, within GFF1527 at 383.839 kb on + strand, within GFF1527 at 383.872 kb on + strand at 383.873 kb on - strand at 384.001 kb on - strand, within GFF1528 at 384.039 kb on + strand, within GFF1528 at 384.524 kb on + strand, within GFF1529 at 384.525 kb on - strand, within GFF1529 at 384.558 kb on - strand, within GFF1529 at 384.558 kb on - strand, within GFF1529 at 384.887 kb on + strand at 384.888 kb on - strand at 384.888 kb on - strand at 384.888 kb on - strand at 384.888 kb on - strand at 384.888 kb on - strand at 384.888 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 383,485 + GFF1527 0.52 +0.3 383,486 - GFF1527 0.52 +0.7 383,486 - GFF1527 0.52 -0.6 383,639 - GFF1527 0.68 -2.4 383,839 + GFF1527 0.89 -0.7 383,872 + -0.0 383,873 - -0.4 384,001 - GFF1528 0.41 -0.1 384,039 + GFF1528 0.67 +0.7 384,524 + GFF1529 0.51 +0.6 384,525 - GFF1529 0.51 +0.4 384,558 - GFF1529 0.55 +0.6 384,558 - GFF1529 0.55 +0.2 384,887 + +0.1 384,888 - -0.6 384,888 - +0.5 384,888 - +0.7 384,888 - -0.1 384,888 - -1.7 384,888 - +0.4
Or see this region's nucleotide sequence