Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1514 and GFF1515 are separated by 11 nucleotides GFF1515 and GFF1516 are separated by 63 nucleotides GFF1516 and GFF1517 are separated by 17 nucleotides GFF1517 and GFF1518 are separated by 80 nucleotides
GFF1514 - hypothetical protein, at 362,976 to 364,070
GFF1514
GFF1515 - PhnB protein, at 364,082 to 364,450
GFF1515
GFF1516 - Cyanoglobin; Hemoglobin-like protein HbN, at 364,514 to 364,873
GFF1516
GFF1517 - hypothetical protein, at 364,891 to 365,145
GFF1517
GFF1518 - HTH-type transcriptional regulator malT, at 365,226 to 368,438
GFF1518
Position (kb) 364
365 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 363.628 kb on + strand, within GFF1514 at 363.629 kb on - strand, within GFF1514 at 363.719 kb on - strand, within GFF1514 at 363.719 kb on - strand, within GFF1514 at 363.730 kb on + strand, within GFF1514 at 363.730 kb on + strand, within GFF1514 at 363.730 kb on + strand, within GFF1514 at 363.730 kb on + strand, within GFF1514 at 364.079 kb on - strand at 364.079 kb on - strand at 364.239 kb on + strand, within GFF1515 at 364.240 kb on - strand, within GFF1515 at 364.240 kb on - strand, within GFF1515 at 364.428 kb on + strand at 364.443 kb on + strand at 364.443 kb on + strand at 364.444 kb on - strand at 364.690 kb on - strand, within GFF1516 at 364.858 kb on - strand at 364.858 kb on - strand at 364.919 kb on + strand, within GFF1517 at 364.920 kb on - strand, within GFF1517 at 365.057 kb on + strand, within GFF1517 at 365.057 kb on + strand, within GFF1517
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 363,628 + GFF1514 0.60 +0.3 363,629 - GFF1514 0.60 -0.3 363,719 - GFF1514 0.68 -1.0 363,719 - GFF1514 0.68 +0.2 363,730 + GFF1514 0.69 -2.0 363,730 + GFF1514 0.69 +0.3 363,730 + GFF1514 0.69 +1.3 363,730 + GFF1514 0.69 -1.1 364,079 - +0.2 364,079 - -1.0 364,239 + GFF1515 0.43 -0.4 364,240 - GFF1515 0.43 -0.5 364,240 - GFF1515 0.43 +2.9 364,428 + -0.1 364,443 + -0.7 364,443 + -0.4 364,444 - +0.2 364,690 - GFF1516 0.49 +0.4 364,858 - -0.1 364,858 - +0.2 364,919 + GFF1517 0.11 +0.6 364,920 - GFF1517 0.11 +0.4 365,057 + GFF1517 0.65 +1.3 365,057 + GFF1517 0.65 -0.2
Or see this region's nucleotide sequence