Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1450 and GFF1451 are separated by 36 nucleotides GFF1451 and GFF1452 overlap by 4 nucleotides GFF1452 and GFF1453 are separated by 6 nucleotides GFF1453 and GFF1454 overlap by 8 nucleotides
GFF1450 - Flagellar M-ring protein FliF, at 304,939 to 306,639
GFF1450
GFF1451 - Flagellar motor switch protein FliG, at 306,676 to 307,674
GFF1451
GFF1452 - hypothetical protein, at 307,671 to 307,787
GFF1452
GFF1453 - Flagellar assembly protein FliH, at 307,794 to 308,498
GFF1453
GFF1454 - Flagellum-specific ATP synthase FliI, at 308,491 to 309,969
GFF1454
Position (kb) 306
307
308 Strain fitness (log2 ratio) -1
0
1 at 305.678 kb on - strand, within GFF1450 at 305.678 kb on - strand, within GFF1450 at 306.043 kb on + strand, within GFF1450 at 306.043 kb on + strand, within GFF1450 at 306.044 kb on - strand, within GFF1450 at 306.898 kb on + strand, within GFF1451 at 306.898 kb on + strand, within GFF1451 at 306.899 kb on - strand, within GFF1451 at 306.899 kb on - strand, within GFF1451 at 306.899 kb on - strand, within GFF1451 at 307.208 kb on - strand, within GFF1451 at 307.208 kb on - strand, within GFF1451 at 307.208 kb on - strand, within GFF1451 at 307.671 kb on - strand at 307.785 kb on + strand at 308.132 kb on + strand, within GFF1453
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 305,678 - GFF1450 0.43 -1.1 305,678 - GFF1450 0.43 -0.3 306,043 + GFF1450 0.65 +0.7 306,043 + GFF1450 0.65 -0.0 306,044 - GFF1450 0.65 +0.1 306,898 + GFF1451 0.22 -0.0 306,898 + GFF1451 0.22 +1.0 306,899 - GFF1451 0.22 -0.4 306,899 - GFF1451 0.22 +1.0 306,899 - GFF1451 0.22 +1.3 307,208 - GFF1451 0.53 +1.3 307,208 - GFF1451 0.53 +0.4 307,208 - GFF1451 0.53 -0.0 307,671 - +0.1 307,785 + +0.5 308,132 + GFF1453 0.48 -0.1
Or see this region's nucleotide sequence