Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1427 and GFF1428 are separated by 155 nucleotides GFF1428 and GFF1429 are separated by 2 nucleotides GFF1429 and GFF1430 overlap by 8 nucleotides
GFF1427 - hypothetical protein, at 281,925 to 282,458
GFF1427
GFF1428 - RNA polymerase sigma factor for flagellar operon, at 282,614 to 283,330
GFF1428
GFF1429 - hypothetical protein, at 283,333 to 284,133
GFF1429
GFF1430 - Flagellar biosynthesis protein FlhF, at 284,126 to 285,637
GFF1430
Position (kb) 283
284
285 Strain fitness (log2 ratio) -2
-1
0
1 at 282.379 kb on + strand, within GFF1427 at 282.379 kb on + strand, within GFF1427 at 282.380 kb on - strand, within GFF1427 at 282.380 kb on - strand, within GFF1427 at 282.394 kb on + strand, within GFF1427 at 282.394 kb on + strand, within GFF1427 at 282.394 kb on + strand, within GFF1427 at 282.394 kb on + strand, within GFF1427 at 282.394 kb on + strand, within GFF1427 at 282.395 kb on - strand, within GFF1427 at 282.395 kb on - strand, within GFF1427 at 282.395 kb on - strand, within GFF1427 at 282.395 kb on - strand, within GFF1427 at 282.395 kb on - strand, within GFF1427 at 282.504 kb on - strand at 282.517 kb on - strand at 282.525 kb on - strand at 282.554 kb on + strand at 282.555 kb on - strand at 282.555 kb on - strand at 282.573 kb on + strand at 282.732 kb on + strand, within GFF1428 at 282.732 kb on + strand, within GFF1428 at 282.732 kb on + strand, within GFF1428 at 282.733 kb on - strand, within GFF1428 at 282.735 kb on + strand, within GFF1428 at 282.735 kb on + strand, within GFF1428 at 282.735 kb on + strand, within GFF1428 at 282.735 kb on + strand, within GFF1428 at 282.735 kb on + strand, within GFF1428 at 282.735 kb on + strand, within GFF1428 at 282.736 kb on - strand, within GFF1428 at 283.326 kb on + strand at 283.326 kb on + strand at 283.326 kb on + strand at 283.326 kb on + strand at 283.327 kb on - strand at 283.327 kb on - strand at 283.327 kb on - strand at 283.688 kb on + strand, within GFF1429 at 283.689 kb on - strand, within GFF1429 at 283.689 kb on - strand, within GFF1429 at 284.028 kb on - strand, within GFF1429 at 284.208 kb on + strand at 284.676 kb on + strand, within GFF1430 at 284.676 kb on + strand, within GFF1430 at 284.677 kb on - strand, within GFF1430
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 282,379 + GFF1427 0.85 -0.6 282,379 + GFF1427 0.85 -1.3 282,380 - GFF1427 0.85 +0.3 282,380 - GFF1427 0.85 +0.5 282,394 + GFF1427 0.88 -0.0 282,394 + GFF1427 0.88 -0.0 282,394 + GFF1427 0.88 -0.3 282,394 + GFF1427 0.88 +0.3 282,394 + GFF1427 0.88 +0.3 282,395 - GFF1427 0.88 -1.7 282,395 - GFF1427 0.88 -0.2 282,395 - GFF1427 0.88 +0.1 282,395 - GFF1427 0.88 -0.6 282,395 - GFF1427 0.88 -1.7 282,504 - -0.7 282,517 - +0.3 282,525 - -0.2 282,554 + -0.1 282,555 - -0.7 282,555 - +1.7 282,573 + +0.3 282,732 + GFF1428 0.16 -0.3 282,732 + GFF1428 0.16 +0.3 282,732 + GFF1428 0.16 -0.3 282,733 - GFF1428 0.17 +0.1 282,735 + GFF1428 0.17 -1.1 282,735 + GFF1428 0.17 +0.7 282,735 + GFF1428 0.17 +0.3 282,735 + GFF1428 0.17 -0.5 282,735 + GFF1428 0.17 -0.6 282,735 + GFF1428 0.17 -2.2 282,736 - GFF1428 0.17 +1.0 283,326 + +0.6 283,326 + +0.7 283,326 + +0.1 283,326 + -1.6 283,327 - +1.1 283,327 - -0.2 283,327 - +0.5 283,688 + GFF1429 0.44 +0.2 283,689 - GFF1429 0.44 +0.9 283,689 - GFF1429 0.44 +1.7 284,028 - GFF1429 0.87 +0.3 284,208 + +0.1 284,676 + GFF1430 0.36 +0.7 284,676 + GFF1430 0.36 -0.4 284,677 - GFF1430 0.36 -1.0
Or see this region's nucleotide sequence