Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1386 and GFF1387 are separated by 103 nucleotides GFF1387 and GFF1388 are separated by 2 nucleotides GFF1388 and GFF1389 overlap by 4 nucleotides
GFF1386 - General secretion pathway protein K, at 240,112 to 241,113
GFF1386
GFF1387 - General secretion pathway protein L, at 241,217 to 242,524
GFF1387
GFF1388 - General secretion pathway protein M, at 242,527 to 243,060
GFF1388
GFF1389 - General secretion pathway protein N, at 243,057 to 243,854
GFF1389
Position (kb) 241
242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 240.601 kb on + strand, within GFF1386 at 240.602 kb on - strand, within GFF1386 at 240.973 kb on + strand, within GFF1386 at 241.141 kb on + strand at 241.141 kb on + strand at 241.141 kb on + strand at 241.142 kb on - strand at 241.142 kb on - strand at 241.167 kb on + strand at 241.167 kb on + strand at 241.168 kb on - strand at 241.168 kb on - strand at 241.168 kb on - strand at 241.168 kb on - strand at 241.168 kb on - strand at 241.192 kb on - strand at 241.192 kb on - strand at 241.192 kb on - strand at 241.718 kb on + strand, within GFF1387 at 241.877 kb on + strand, within GFF1387 at 241.878 kb on - strand, within GFF1387 at 242.384 kb on + strand, within GFF1387 at 242.385 kb on - strand, within GFF1387 at 242.385 kb on - strand, within GFF1387 at 242.385 kb on - strand, within GFF1387
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 240,601 + GFF1386 0.49 -0.9 240,602 - GFF1386 0.49 -1.0 240,973 + GFF1386 0.86 +0.7 241,141 + -0.1 241,141 + +1.0 241,141 + -0.0 241,142 - -0.7 241,142 - -0.6 241,167 + -0.3 241,167 + +1.0 241,168 - -0.2 241,168 - +0.1 241,168 - -1.2 241,168 - -1.0 241,168 - -0.4 241,192 - +0.3 241,192 - -0.7 241,192 - -3.2 241,718 + GFF1387 0.38 +1.1 241,877 + GFF1387 0.50 -0.6 241,878 - GFF1387 0.51 +0.1 242,384 + GFF1387 0.89 +0.1 242,385 - GFF1387 0.89 -0.0 242,385 - GFF1387 0.89 +0.7 242,385 - GFF1387 0.89 -1.4
Or see this region's nucleotide sequence