Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1328

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1327 and GFF1328 are separated by 190 nucleotidesGFF1328 and GFF1329 are separated by 52 nucleotides GFF1327 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 175,668 to 180,446 GFF1327 GFF1328 - Transposase and inactivated derivatives, at 180,637 to 181,338 GFF1328 GFF1329 - FIG00761799: membrane protein, at 181,391 to 182,518 GFF1329 Position (kb) 180 181 182Strain fitness (log2 ratio) -2 -1 0 1 2at 179.638 kb on + strand, within GFF1327at 179.638 kb on + strand, within GFF1327at 179.638 kb on + strand, within GFF1327at 179.638 kb on + strand, within GFF1327at 179.638 kb on + strand, within GFF1327at 179.639 kb on - strand, within GFF1327at 179.639 kb on - strand, within GFF1327at 179.639 kb on - strand, within GFF1327at 179.639 kb on - strand, within GFF1327at 179.639 kb on - strand, within GFF1327at 179.639 kb on - strand, within GFF1327at 179.639 kb on - strand, within GFF1327at 179.639 kb on - strand, within GFF1327at 179.681 kb on - strand, within GFF1327at 179.681 kb on - strand, within GFF1327at 179.681 kb on - strand, within GFF1327at 179.788 kb on + strand, within GFF1327at 179.788 kb on + strand, within GFF1327at 179.789 kb on - strand, within GFF1327at 179.789 kb on - strand, within GFF1327at 179.789 kb on - strand, within GFF1327at 179.789 kb on - strand, within GFF1327at 179.789 kb on - strand, within GFF1327at 179.789 kb on - strand, within GFF1327at 179.789 kb on - strand, within GFF1327at 179.789 kb on - strand, within GFF1327at 179.824 kb on + strand, within GFF1327at 179.824 kb on + strand, within GFF1327at 179.824 kb on + strand, within GFF1327at 179.825 kb on - strand, within GFF1327at 179.825 kb on - strand, within GFF1327at 179.857 kb on + strand, within GFF1327at 179.857 kb on + strand, within GFF1327at 179.857 kb on + strand, within GFF1327at 179.857 kb on + strand, within GFF1327at 179.857 kb on + strand, within GFF1327at 179.857 kb on + strand, within GFF1327at 179.858 kb on - strand, within GFF1327at 179.858 kb on - strand, within GFF1327at 179.858 kb on - strand, within GFF1327at 179.858 kb on - strand, within GFF1327at 179.858 kb on - strand, within GFF1327at 179.860 kb on + strand, within GFF1327at 179.860 kb on + strand, within GFF1327at 179.860 kb on + strand, within GFF1327at 179.860 kb on + strand, within GFF1327at 179.861 kb on - strand, within GFF1327at 179.861 kb on - strand, within GFF1327at 179.923 kb on + strand, within GFF1327at 179.923 kb on + strand, within GFF1327at 179.924 kb on - strand, within GFF1327at 179.924 kb on - strand, within GFF1327at 179.924 kb on - strand, within GFF1327at 179.924 kb on - strand, within GFF1327at 179.924 kb on - strand, within GFF1327at 179.924 kb on - strand, within GFF1327at 180.160 kb on + strandat 180.160 kb on + strandat 180.160 kb on + strandat 180.211 kb on + strandat 180.212 kb on - strandat 180.400 kb on + strandat 180.400 kb on + strandat 180.401 kb on - strandat 180.401 kb on - strandat 180.474 kb on + strandat 180.474 kb on + strandat 180.474 kb on + strandat 180.475 kb on - strandat 180.499 kb on + strandat 180.500 kb on - strandat 180.500 kb on - strandat 180.500 kb on - strandat 180.500 kb on - strandat 180.500 kb on - strandat 180.500 kb on - strandat 180.818 kb on + strand, within GFF1328at 180.818 kb on + strand, within GFF1328at 180.905 kb on + strand, within GFF1328at 180.905 kb on + strand, within GFF1328at 180.905 kb on + strand, within GFF1328at 180.906 kb on - strand, within GFF1328at 180.906 kb on - strand, within GFF1328at 180.980 kb on + strand, within GFF1328at 180.980 kb on + strand, within GFF1328at 180.980 kb on + strand, within GFF1328at 180.980 kb on + strand, within GFF1328at 180.980 kb on + strand, within GFF1328at 180.980 kb on + strand, within GFF1328at 180.980 kb on + strand, within GFF1328at 180.980 kb on + strand, within GFF1328at 180.981 kb on - strand, within GFF1328at 180.981 kb on - strand, within GFF1328at 180.981 kb on - strand, within GFF1328at 180.981 kb on - strand, within GFF1328at 181.001 kb on + strand, within GFF1328at 181.001 kb on + strand, within GFF1328at 181.002 kb on - strand, within GFF1328at 181.031 kb on + strand, within GFF1328at 181.032 kb on - strand, within GFF1328at 181.065 kb on - strand, within GFF1328at 181.079 kb on + strand, within GFF1328at 181.079 kb on + strand, within GFF1328at 181.080 kb on - strand, within GFF1328at 181.080 kb on - strand, within GFF1328at 181.089 kb on - strand, within GFF1328at 181.178 kb on + strand, within GFF1328at 181.178 kb on + strand, within GFF1328at 181.178 kb on + strand, within GFF1328at 181.178 kb on + strand, within GFF1328at 181.178 kb on + strand, within GFF1328at 181.179 kb on - strand, within GFF1328at 181.179 kb on - strand, within GFF1328at 181.304 kb on + strandat 181.304 kb on + strandat 181.305 kb on - strandat 181.305 kb on - strandat 181.393 kb on - strandat 181.393 kb on - strandat 181.671 kb on + strand, within GFF1329at 181.671 kb on + strand, within GFF1329at 181.671 kb on + strand, within GFF1329at 181.671 kb on + strand, within GFF1329at 181.671 kb on + strand, within GFF1329at 181.672 kb on - strand, within GFF1329at 181.734 kb on + strand, within GFF1329at 181.734 kb on + strand, within GFF1329at 181.734 kb on + strand, within GFF1329at 181.735 kb on - strand, within GFF1329at 181.872 kb on + strand, within GFF1329at 181.873 kb on + strand, within GFF1329at 181.873 kb on - strand, within GFF1329at 181.873 kb on - strand, within GFF1329at 181.873 kb on - strand, within GFF1329at 181.873 kb on - strand, within GFF1329at 181.918 kb on - strand, within GFF1329at 182.152 kb on + strand, within GFF1329at 182.153 kb on - strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.167 kb on - strand, within GFF1329at 182.167 kb on - strand, within GFF1329at 182.167 kb on - strand, within GFF1329at 182.167 kb on - strand, within GFF1329at 182.167 kb on - strand, within GFF1329at 182.167 kb on - strand, within GFF1329at 182.167 kb on - strand, within GFF1329at 182.167 kb on - strand, within GFF1329

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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179,638 + GFF1327 0.83 -1.0
179,638 + GFF1327 0.83 -0.6
179,638 + GFF1327 0.83 -0.7
179,638 + GFF1327 0.83 -0.9
179,638 + GFF1327 0.83 +0.7
179,639 - GFF1327 0.83 -0.2
179,639 - GFF1327 0.83 -0.9
179,639 - GFF1327 0.83 +0.1
179,639 - GFF1327 0.83 -1.2
179,639 - GFF1327 0.83 +0.3
179,639 - GFF1327 0.83 -1.1
179,639 - GFF1327 0.83 -0.7
179,639 - GFF1327 0.83 -0.1
179,681 - GFF1327 0.84 -0.8
179,681 - GFF1327 0.84 -0.7
179,681 - GFF1327 0.84 -1.7
179,788 + GFF1327 0.86 -1.2
179,788 + GFF1327 0.86 -0.5
179,789 - GFF1327 0.86 -0.6
179,789 - GFF1327 0.86 +0.1
179,789 - GFF1327 0.86 +0.5
179,789 - GFF1327 0.86 -0.0
179,789 - GFF1327 0.86 -0.8
179,789 - GFF1327 0.86 -0.5
179,789 - GFF1327 0.86 -1.0
179,789 - GFF1327 0.86 -0.3
179,824 + GFF1327 0.87 +1.5
179,824 + GFF1327 0.87 +1.3
179,824 + GFF1327 0.87 +0.6
179,825 - GFF1327 0.87 +0.7
179,825 - GFF1327 0.87 +0.3
179,857 + GFF1327 0.88 -0.3
179,857 + GFF1327 0.88 -0.3
179,857 + GFF1327 0.88 -1.7
179,857 + GFF1327 0.88 -0.6
179,857 + GFF1327 0.88 +0.7
179,857 + GFF1327 0.88 -0.0
179,858 - GFF1327 0.88 +0.3
179,858 - GFF1327 0.88 -0.5
179,858 - GFF1327 0.88 +0.4
179,858 - GFF1327 0.88 -0.3
179,858 - GFF1327 0.88 -1.7
179,860 + GFF1327 0.88 -0.8
179,860 + GFF1327 0.88 -0.3
179,860 + GFF1327 0.88 +0.5
179,860 + GFF1327 0.88 -0.5
179,861 - GFF1327 0.88 -0.4
179,861 - GFF1327 0.88 +0.3
179,923 + GFF1327 0.89 -0.3
179,923 + GFF1327 0.89 -0.3
179,924 - GFF1327 0.89 -0.5
179,924 - GFF1327 0.89 -1.8
179,924 - GFF1327 0.89 +0.4
179,924 - GFF1327 0.89 -2.6
179,924 - GFF1327 0.89 -0.8
179,924 - GFF1327 0.89 -1.7
180,160 + +0.7
180,160 + -1.4
180,160 + -0.9
180,211 + +0.4
180,212 - +0.1
180,400 + +2.6
180,400 + -0.3
180,401 - -0.6
180,401 - +1.8
180,474 + -1.0
180,474 + -0.7
180,474 + -1.9
180,475 - -0.4
180,499 + +0.4
180,500 - +0.2
180,500 - +0.6
180,500 - +0.2
180,500 - -0.1
180,500 - +0.0
180,500 - +0.3
180,818 + GFF1328 0.26 +0.8
180,818 + GFF1328 0.26 +0.1
180,905 + GFF1328 0.38 +0.3
180,905 + GFF1328 0.38 +1.5
180,905 + GFF1328 0.38 +0.7
180,906 - GFF1328 0.38 +0.6
180,906 - GFF1328 0.38 +0.1
180,980 + GFF1328 0.49 +0.3
180,980 + GFF1328 0.49 -0.2
180,980 + GFF1328 0.49 +0.3
180,980 + GFF1328 0.49 +1.7
180,980 + GFF1328 0.49 +0.3
180,980 + GFF1328 0.49 -0.5
180,980 + GFF1328 0.49 -0.4
180,980 + GFF1328 0.49 +1.3
180,981 - GFF1328 0.49 +0.1
180,981 - GFF1328 0.49 -0.3
180,981 - GFF1328 0.49 -0.7
180,981 - GFF1328 0.49 +0.1
181,001 + GFF1328 0.52 +1.0
181,001 + GFF1328 0.52 +0.3
181,002 - GFF1328 0.52 -0.1
181,031 + GFF1328 0.56 +0.3
181,032 - GFF1328 0.56 -0.2
181,065 - GFF1328 0.61 -1.3
181,079 + GFF1328 0.63 -0.1
181,079 + GFF1328 0.63 -0.2
181,080 - GFF1328 0.63 +0.1
181,080 - GFF1328 0.63 -0.1
181,089 - GFF1328 0.64 +0.2
181,178 + GFF1328 0.77 +0.5
181,178 + GFF1328 0.77 +0.3
181,178 + GFF1328 0.77 +0.7
181,178 + GFF1328 0.77 -2.0
181,178 + GFF1328 0.77 -0.0
181,179 - GFF1328 0.77 +1.1
181,179 - GFF1328 0.77 -0.7
181,304 + +0.3
181,304 + +0.3
181,305 - -0.3
181,305 - -1.4
181,393 - +0.5
181,393 - +0.7
181,671 + GFF1329 0.25 +2.3
181,671 + GFF1329 0.25 +0.7
181,671 + GFF1329 0.25 +0.1
181,671 + GFF1329 0.25 +0.4
181,671 + GFF1329 0.25 +0.3
181,672 - GFF1329 0.25 -1.0
181,734 + GFF1329 0.30 +0.2
181,734 + GFF1329 0.30 +0.3
181,734 + GFF1329 0.30 +0.7
181,735 - GFF1329 0.30 -0.1
181,872 + GFF1329 0.43 +0.1
181,873 + GFF1329 0.43 -0.7
181,873 - GFF1329 0.43 +0.1
181,873 - GFF1329 0.43 -0.6
181,873 - GFF1329 0.43 -0.1
181,873 - GFF1329 0.43 +0.1
181,918 - GFF1329 0.47 +0.6
182,152 + GFF1329 0.67 +0.4
182,153 - GFF1329 0.68 +0.2
182,166 + GFF1329 0.69 +0.6
182,166 + GFF1329 0.69 -2.3
182,166 + GFF1329 0.69 -0.3
182,166 + GFF1329 0.69 +0.6
182,166 + GFF1329 0.69 -1.2
182,166 + GFF1329 0.69 -0.9
182,166 + GFF1329 0.69 +0.9
182,166 + GFF1329 0.69 +0.7
182,167 - GFF1329 0.69 -1.7
182,167 - GFF1329 0.69 +1.3
182,167 - GFF1329 0.69 +0.3
182,167 - GFF1329 0.69 +0.4
182,167 - GFF1329 0.69 +1.3
182,167 - GFF1329 0.69 -0.4
182,167 - GFF1329 0.69 -0.4
182,167 - GFF1329 0.69 -1.7

Or see this region's nucleotide sequence