Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1190 and GFF1191 are separated by 10 nucleotides GFF1191 and GFF1192 overlap by 4 nucleotides GFF1192 and GFF1193 are separated by 10 nucleotides GFF1193 and GFF1194 are separated by 17 nucleotides GFF1194 and GFF1195 are separated by 422 nucleotides
GFF1190 - Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2), at 47,777 to 49,012
GFF1190
GFF1191 - putative lipoprotein, at 49,023 to 49,277
GFF1191
GFF1192 - Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); Putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2), at 49,274 to 49,876
GFF1192
GFF1193 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 49,887 to 52,856
GFF1193
GFF1194 - Formate dehydrogenase subunit or accessory protein, at 52,874 to 53,107
GFF1194
GFF1195 - Sigma-54 dependent response regulator, at 53,530 to 54,912
GFF1195
Position (kb) 49
50
51
52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 49.051 kb on + strand, within GFF1191 at 49.051 kb on + strand, within GFF1191 at 49.052 kb on - strand, within GFF1191 at 49.052 kb on - strand, within GFF1191 at 49.052 kb on - strand, within GFF1191 at 49.066 kb on + strand, within GFF1191 at 49.066 kb on + strand, within GFF1191 at 49.066 kb on + strand, within GFF1191 at 49.067 kb on - strand, within GFF1191 at 49.135 kb on + strand, within GFF1191 at 49.135 kb on + strand, within GFF1191 at 49.136 kb on - strand, within GFF1191 at 49.136 kb on - strand, within GFF1191 at 49.159 kb on + strand, within GFF1191 at 49.160 kb on - strand, within GFF1191 at 49.303 kb on - strand at 49.303 kb on - strand at 49.303 kb on - strand at 49.464 kb on + strand, within GFF1192 at 49.465 kb on - strand, within GFF1192 at 49.593 kb on + strand, within GFF1192 at 49.594 kb on - strand, within GFF1192 at 49.594 kb on - strand, within GFF1192 at 49.659 kb on + strand, within GFF1192 at 49.659 kb on + strand, within GFF1192 at 49.659 kb on + strand, within GFF1192 at 49.659 kb on + strand, within GFF1192 at 49.659 kb on + strand, within GFF1192 at 49.659 kb on + strand, within GFF1192 at 49.660 kb on - strand, within GFF1192 at 49.660 kb on - strand, within GFF1192 at 49.660 kb on - strand, within GFF1192 at 49.948 kb on + strand at 49.949 kb on - strand at 49.949 kb on - strand at 49.949 kb on - strand at 49.949 kb on - strand at 49.952 kb on + strand at 49.954 kb on + strand at 49.954 kb on + strand at 49.954 kb on + strand at 49.954 kb on + strand at 49.954 kb on + strand at 49.954 kb on + strand at 49.954 kb on + strand at 49.954 kb on + strand at 49.954 kb on + strand at 49.955 kb on - strand at 49.955 kb on - strand at 49.955 kb on - strand at 50.011 kb on + strand at 50.011 kb on + strand at 50.011 kb on + strand at 50.014 kb on + strand at 50.014 kb on + strand at 50.014 kb on + strand at 50.014 kb on + strand at 50.015 kb on - strand at 50.015 kb on - strand at 50.015 kb on - strand at 50.015 kb on - strand at 50.264 kb on - strand, within GFF1193 at 50.347 kb on + strand, within GFF1193 at 50.347 kb on + strand, within GFF1193 at 50.347 kb on + strand, within GFF1193 at 50.347 kb on + strand, within GFF1193 at 50.347 kb on + strand, within GFF1193 at 50.348 kb on - strand, within GFF1193 at 50.348 kb on - strand, within GFF1193 at 50.348 kb on - strand, within GFF1193 at 50.390 kb on + strand, within GFF1193 at 50.390 kb on + strand, within GFF1193 at 50.390 kb on + strand, within GFF1193 at 50.390 kb on + strand, within GFF1193 at 50.395 kb on + strand, within GFF1193 at 50.395 kb on + strand, within GFF1193 at 50.395 kb on + strand, within GFF1193 at 50.395 kb on + strand, within GFF1193 at 50.395 kb on + strand, within GFF1193 at 50.395 kb on + strand, within GFF1193 at 50.395 kb on + strand, within GFF1193 at 50.395 kb on + strand, within GFF1193 at 50.395 kb on + strand, within GFF1193 at 50.396 kb on - strand, within GFF1193 at 50.396 kb on - strand, within GFF1193 at 50.396 kb on - strand, within GFF1193 at 50.396 kb on - strand, within GFF1193 at 50.396 kb on - strand, within GFF1193 at 50.396 kb on - strand, within GFF1193 at 50.396 kb on - strand, within GFF1193 at 50.396 kb on - strand, within GFF1193 at 50.425 kb on + strand, within GFF1193 at 50.425 kb on + strand, within GFF1193 at 50.425 kb on + strand, within GFF1193 at 50.425 kb on + strand, within GFF1193 at 50.425 kb on + strand, within GFF1193 at 50.426 kb on - strand, within GFF1193 at 50.426 kb on - strand, within GFF1193 at 50.426 kb on - strand, within GFF1193 at 50.677 kb on + strand, within GFF1193 at 50.678 kb on - strand, within GFF1193 at 50.776 kb on + strand, within GFF1193 at 50.776 kb on + strand, within GFF1193 at 50.776 kb on + strand, within GFF1193 at 50.776 kb on + strand, within GFF1193 at 50.776 kb on + strand, within GFF1193 at 50.819 kb on - strand, within GFF1193 at 50.819 kb on - strand, within GFF1193 at 50.842 kb on + strand, within GFF1193 at 50.843 kb on - strand, within GFF1193 at 50.860 kb on + strand, within GFF1193 at 50.968 kb on + strand, within GFF1193 at 50.968 kb on + strand, within GFF1193 at 50.968 kb on + strand, within GFF1193 at 50.968 kb on + strand, within GFF1193 at 50.969 kb on - strand, within GFF1193 at 51.055 kb on + strand, within GFF1193 at 51.055 kb on + strand, within GFF1193 at 51.055 kb on + strand, within GFF1193 at 51.055 kb on + strand, within GFF1193 at 51.055 kb on + strand, within GFF1193 at 51.056 kb on - strand, within GFF1193 at 51.056 kb on - strand, within GFF1193 at 51.056 kb on - strand, within GFF1193 at 51.056 kb on - strand, within GFF1193 at 51.056 kb on - strand, within GFF1193 at 51.230 kb on - strand, within GFF1193 at 51.230 kb on - strand, within GFF1193 at 51.230 kb on - strand, within GFF1193 at 51.301 kb on + strand, within GFF1193 at 51.301 kb on + strand, within GFF1193 at 51.302 kb on - strand, within GFF1193 at 51.391 kb on + strand, within GFF1193 at 51.391 kb on + strand, within GFF1193 at 51.392 kb on - strand, within GFF1193 at 51.392 kb on - strand, within GFF1193 at 51.392 kb on - strand, within GFF1193 at 51.392 kb on - strand, within GFF1193 at 51.392 kb on - strand, within GFF1193 at 51.503 kb on - strand, within GFF1193 at 51.523 kb on + strand, within GFF1193 at 51.523 kb on + strand, within GFF1193 at 51.523 kb on + strand, within GFF1193 at 51.524 kb on - strand, within GFF1193 at 51.524 kb on - strand, within GFF1193 at 51.524 kb on - strand, within GFF1193 at 51.577 kb on + strand, within GFF1193 at 51.577 kb on + strand, within GFF1193 at 51.577 kb on + strand, within GFF1193 at 51.578 kb on - strand, within GFF1193 at 51.578 kb on - strand, within GFF1193 at 51.578 kb on - strand, within GFF1193 at 51.578 kb on - strand, within GFF1193 at 51.578 kb on - strand, within GFF1193 at 51.580 kb on + strand, within GFF1193 at 51.580 kb on + strand, within GFF1193 at 51.580 kb on + strand, within GFF1193 at 51.581 kb on - strand, within GFF1193 at 51.581 kb on - strand, within GFF1193 at 51.656 kb on + strand, within GFF1193 at 51.896 kb on - strand, within GFF1193 at 51.896 kb on - strand, within GFF1193 at 51.896 kb on - strand, within GFF1193 at 51.913 kb on + strand, within GFF1193 at 51.913 kb on + strand, within GFF1193 at 51.913 kb on + strand, within GFF1193 at 51.913 kb on + strand, within GFF1193 at 51.913 kb on + strand, within GFF1193 at 51.914 kb on - strand, within GFF1193 at 51.914 kb on - strand, within GFF1193 at 51.914 kb on - strand, within GFF1193 at 51.914 kb on - strand, within GFF1193 at 51.914 kb on - strand, within GFF1193 at 51.914 kb on - strand, within GFF1193 at 51.914 kb on - strand, within GFF1193 at 51.914 kb on - strand, within GFF1193 at 51.914 kb on - strand, within GFF1193 at 52.129 kb on + strand, within GFF1193 at 52.129 kb on + strand, within GFF1193 at 52.129 kb on + strand, within GFF1193 at 52.129 kb on + strand, within GFF1193 at 52.129 kb on + strand, within GFF1193 at 52.129 kb on + strand, within GFF1193 at 52.130 kb on - strand, within GFF1193 at 52.130 kb on - strand, within GFF1193 at 52.130 kb on - strand, within GFF1193 at 52.130 kb on - strand, within GFF1193 at 52.130 kb on - strand, within GFF1193 at 52.162 kb on + strand, within GFF1193 at 52.162 kb on + strand, within GFF1193 at 52.163 kb on - strand, within GFF1193 at 52.288 kb on + strand, within GFF1193 at 52.288 kb on + strand, within GFF1193 at 52.288 kb on + strand, within GFF1193 at 52.288 kb on + strand, within GFF1193 at 52.288 kb on + strand, within GFF1193 at 52.288 kb on + strand, within GFF1193 at 52.289 kb on - strand, within GFF1193 at 52.289 kb on - strand, within GFF1193 at 52.327 kb on + strand, within GFF1193 at 52.327 kb on + strand, within GFF1193 at 52.327 kb on + strand, within GFF1193 at 52.328 kb on - strand, within GFF1193 at 52.328 kb on - strand, within GFF1193 at 52.328 kb on - strand, within GFF1193 at 52.414 kb on + strand, within GFF1193 at 52.414 kb on + strand, within GFF1193 at 52.415 kb on - strand, within GFF1193 at 52.415 kb on - strand, within GFF1193 at 52.415 kb on - strand, within GFF1193 at 52.415 kb on - strand, within GFF1193 at 52.415 kb on - strand, within GFF1193 at 52.415 kb on - strand, within GFF1193 at 52.415 kb on - strand, within GFF1193 at 52.415 kb on - strand, within GFF1193 at 52.893 kb on + strand at 52.893 kb on + strand at 52.894 kb on - strand at 52.894 kb on - strand at 52.894 kb on - strand at 52.894 kb on - strand at 52.894 kb on - strand at 52.894 kb on - strand at 52.894 kb on - strand at 52.896 kb on + strand at 52.896 kb on + strand at 52.896 kb on + strand at 52.896 kb on + strand at 52.896 kb on + strand at 52.897 kb on - strand at 52.897 kb on - strand at 52.897 kb on - strand at 52.923 kb on + strand, within GFF1194 at 53.161 kb on + strand at 53.162 kb on - strand at 53.172 kb on + strand at 53.172 kb on + strand at 53.173 kb on - strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.190 kb on + strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.191 kb on - strand at 53.205 kb on + strand at 53.376 kb on - strand at 53.488 kb on - strand at 53.509 kb on + strand at 53.509 kb on + strand at 53.510 kb on - strand at 53.510 kb on - strand at 53.510 kb on - strand at 53.517 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 49,051 + GFF1191 0.11 +0.8 49,051 + GFF1191 0.11 +1.0 49,052 - GFF1191 0.11 +0.3 49,052 - GFF1191 0.11 +0.6 49,052 - GFF1191 0.11 +1.1 49,066 + GFF1191 0.17 +0.1 49,066 + GFF1191 0.17 +0.3 49,066 + GFF1191 0.17 -0.4 49,067 - GFF1191 0.17 +1.5 49,135 + GFF1191 0.44 +0.8 49,135 + GFF1191 0.44 -0.6 49,136 - GFF1191 0.44 +1.0 49,136 - GFF1191 0.44 +0.2 49,159 + GFF1191 0.53 -1.0 49,160 - GFF1191 0.54 +0.3 49,303 - +1.1 49,303 - +0.3 49,303 - +0.3 49,464 + GFF1192 0.32 -0.3 49,465 - GFF1192 0.32 -0.7 49,593 + GFF1192 0.53 +0.1 49,594 - GFF1192 0.53 +0.5 49,594 - GFF1192 0.53 +0.6 49,659 + GFF1192 0.64 +0.2 49,659 + GFF1192 0.64 -0.0 49,659 + GFF1192 0.64 -0.5 49,659 + GFF1192 0.64 +1.4 49,659 + GFF1192 0.64 -0.2 49,659 + GFF1192 0.64 -0.4 49,660 - GFF1192 0.64 -1.0 49,660 - GFF1192 0.64 -0.2 49,660 - GFF1192 0.64 -0.5 49,948 + -0.3 49,949 - -0.3 49,949 - +1.3 49,949 - -0.4 49,949 - +1.8 49,952 + -1.0 49,954 + -0.3 49,954 + +1.3 49,954 + -0.3 49,954 + +0.7 49,954 + +0.8 49,954 + -1.3 49,954 + -0.6 49,954 + -0.5 49,954 + -0.3 49,955 - -0.0 49,955 - +2.3 49,955 - +0.6 50,011 + +1.6 50,011 + -0.1 50,011 + -0.3 50,014 + +0.2 50,014 + -1.0 50,014 + -1.0 50,014 + -0.1 50,015 - +0.5 50,015 - -0.8 50,015 - -0.1 50,015 - +0.4 50,264 - GFF1193 0.13 -1.0 50,347 + GFF1193 0.15 -0.2 50,347 + GFF1193 0.15 +0.7 50,347 + GFF1193 0.15 +2.3 50,347 + GFF1193 0.15 +0.2 50,347 + GFF1193 0.15 +0.1 50,348 - GFF1193 0.16 +0.1 50,348 - GFF1193 0.16 +1.1 50,348 - GFF1193 0.16 -0.6 50,390 + GFF1193 0.17 +0.7 50,390 + GFF1193 0.17 -0.1 50,390 + GFF1193 0.17 +1.0 50,390 + GFF1193 0.17 +0.5 50,395 + GFF1193 0.17 -0.3 50,395 + GFF1193 0.17 -1.0 50,395 + GFF1193 0.17 +0.1 50,395 + GFF1193 0.17 -1.3 50,395 + GFF1193 0.17 -1.6 50,395 + GFF1193 0.17 +0.7 50,395 + GFF1193 0.17 -0.2 50,395 + GFF1193 0.17 +1.1 50,395 + GFF1193 0.17 +0.1 50,396 - GFF1193 0.17 +1.0 50,396 - GFF1193 0.17 -0.2 50,396 - GFF1193 0.17 -0.5 50,396 - GFF1193 0.17 +0.6 50,396 - GFF1193 0.17 -0.0 50,396 - GFF1193 0.17 -1.7 50,396 - GFF1193 0.17 +0.5 50,396 - GFF1193 0.17 +2.9 50,425 + GFF1193 0.18 -0.6 50,425 + GFF1193 0.18 +2.9 50,425 + GFF1193 0.18 -0.3 50,425 + GFF1193 0.18 +0.3 50,425 + GFF1193 0.18 +0.1 50,426 - GFF1193 0.18 +0.1 50,426 - GFF1193 0.18 -0.1 50,426 - GFF1193 0.18 +0.7 50,677 + GFF1193 0.27 +0.9 50,678 - GFF1193 0.27 +1.9 50,776 + GFF1193 0.30 -0.2 50,776 + GFF1193 0.30 +0.0 50,776 + GFF1193 0.30 -0.2 50,776 + GFF1193 0.30 +0.5 50,776 + GFF1193 0.30 +0.4 50,819 - GFF1193 0.31 -0.2 50,819 - GFF1193 0.31 +0.3 50,842 + GFF1193 0.32 +0.3 50,843 - GFF1193 0.32 -1.2 50,860 + GFF1193 0.33 +1.9 50,968 + GFF1193 0.36 +0.0 50,968 + GFF1193 0.36 +0.5 50,968 + GFF1193 0.36 +0.5 50,968 + GFF1193 0.36 -0.5 50,969 - GFF1193 0.36 -1.8 51,055 + GFF1193 0.39 +0.5 51,055 + GFF1193 0.39 -0.2 51,055 + GFF1193 0.39 +0.3 51,055 + GFF1193 0.39 -0.3 51,055 + GFF1193 0.39 +1.0 51,056 - GFF1193 0.39 -0.2 51,056 - GFF1193 0.39 -0.7 51,056 - GFF1193 0.39 +1.0 51,056 - GFF1193 0.39 +0.4 51,056 - GFF1193 0.39 -1.3 51,230 - GFF1193 0.45 +1.9 51,230 - GFF1193 0.45 +0.6 51,230 - GFF1193 0.45 +0.2 51,301 + GFF1193 0.48 +0.8 51,301 + GFF1193 0.48 +0.2 51,302 - GFF1193 0.48 +0.2 51,391 + GFF1193 0.51 +0.2 51,391 + GFF1193 0.51 +1.3 51,392 - GFF1193 0.51 +1.3 51,392 - GFF1193 0.51 +0.3 51,392 - GFF1193 0.51 +0.6 51,392 - GFF1193 0.51 +0.2 51,392 - GFF1193 0.51 -0.3 51,503 - GFF1193 0.54 -1.0 51,523 + GFF1193 0.55 +0.0 51,523 + GFF1193 0.55 +1.2 51,523 + GFF1193 0.55 -0.6 51,524 - GFF1193 0.55 +0.3 51,524 - GFF1193 0.55 -0.6 51,524 - GFF1193 0.55 +0.5 51,577 + GFF1193 0.57 +0.3 51,577 + GFF1193 0.57 +0.2 51,577 + GFF1193 0.57 -0.1 51,578 - GFF1193 0.57 -0.6 51,578 - GFF1193 0.57 +0.0 51,578 - GFF1193 0.57 +0.2 51,578 - GFF1193 0.57 +0.2 51,578 - GFF1193 0.57 +0.1 51,580 + GFF1193 0.57 +1.3 51,580 + GFF1193 0.57 +0.5 51,580 + GFF1193 0.57 -1.5 51,581 - GFF1193 0.57 -0.7 51,581 - GFF1193 0.57 -0.4 51,656 + GFF1193 0.60 +0.7 51,896 - GFF1193 0.68 +1.3 51,896 - GFF1193 0.68 +0.3 51,896 - GFF1193 0.68 +1.3 51,913 + GFF1193 0.68 -0.2 51,913 + GFF1193 0.68 -1.2 51,913 + GFF1193 0.68 +0.2 51,913 + GFF1193 0.68 +1.0 51,913 + GFF1193 0.68 -0.8 51,914 - GFF1193 0.68 +0.2 51,914 - GFF1193 0.68 +0.3 51,914 - GFF1193 0.68 +2.9 51,914 - GFF1193 0.68 +2.9 51,914 - GFF1193 0.68 +0.8 51,914 - GFF1193 0.68 -1.9 51,914 - GFF1193 0.68 +0.8 51,914 - GFF1193 0.68 -0.4 51,914 - GFF1193 0.68 -1.3 52,129 + GFF1193 0.75 +0.5 52,129 + GFF1193 0.75 -0.3 52,129 + GFF1193 0.75 +0.4 52,129 + GFF1193 0.75 +1.1 52,129 + GFF1193 0.75 -0.3 52,129 + GFF1193 0.75 +0.2 52,130 - GFF1193 0.76 +1.1 52,130 - GFF1193 0.76 -0.1 52,130 - GFF1193 0.76 +1.3 52,130 - GFF1193 0.76 -0.6 52,130 - GFF1193 0.76 +0.2 52,162 + GFF1193 0.77 +0.7 52,162 + GFF1193 0.77 +0.8 52,163 - GFF1193 0.77 -0.3 52,288 + GFF1193 0.81 +0.8 52,288 + GFF1193 0.81 -0.7 52,288 + GFF1193 0.81 +1.3 52,288 + GFF1193 0.81 -0.1 52,288 + GFF1193 0.81 -0.4 52,288 + GFF1193 0.81 +0.4 52,289 - GFF1193 0.81 +0.8 52,289 - GFF1193 0.81 +0.6 52,327 + GFF1193 0.82 +0.0 52,327 + GFF1193 0.82 -0.2 52,327 + GFF1193 0.82 -1.2 52,328 - GFF1193 0.82 +0.6 52,328 - GFF1193 0.82 +0.4 52,328 - GFF1193 0.82 +0.8 52,414 + GFF1193 0.85 -1.9 52,414 + GFF1193 0.85 +0.6 52,415 - GFF1193 0.85 -0.1 52,415 - GFF1193 0.85 -1.0 52,415 - GFF1193 0.85 +0.2 52,415 - GFF1193 0.85 +0.5 52,415 - GFF1193 0.85 -0.3 52,415 - GFF1193 0.85 +0.9 52,415 - GFF1193 0.85 +2.3 52,415 - GFF1193 0.85 +0.3 52,893 + +0.3 52,893 + -0.4 52,894 - -0.4 52,894 - -0.1 52,894 - +0.5 52,894 - -0.7 52,894 - +0.3 52,894 - -0.4 52,894 - +0.2 52,896 + -0.3 52,896 + +0.6 52,896 + -0.4 52,896 + -0.0 52,896 + -1.9 52,897 - -1.0 52,897 - +0.8 52,897 - +0.5 52,923 + GFF1194 0.21 -3.3 53,161 + +0.6 53,162 - -0.5 53,172 + -1.1 53,172 + -0.8 53,173 - +0.5 53,190 + +1.5 53,190 + +1.3 53,190 + -0.5 53,190 + -0.8 53,190 + -0.2 53,190 + -0.3 53,190 + +0.3 53,190 + +2.3 53,190 + +0.3 53,190 + +0.1 53,190 + -0.0 53,191 - +0.0 53,191 - +0.6 53,191 - -0.6 53,191 - -0.9 53,191 - +0.4 53,191 - +0.2 53,191 - +0.1 53,191 - +0.1 53,191 - +0.3 53,191 - +1.0 53,191 - +0.3 53,205 + -0.3 53,376 - +0.5 53,488 - +0.2 53,509 + -0.7 53,509 + -1.4 53,510 - -0.2 53,510 - -0.4 53,510 - -0.1 53,517 - -0.6
Or see this region's nucleotide sequence