Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF115

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF113 and GFF114 overlap by 1 nucleotidesGFF114 and GFF115 are separated by 46 nucleotidesGFF115 and GFF116 are separated by 137 nucleotides GFF113 - Membrane protein, putative, at 122,472 to 123,383 GFF113 GFF114 - COG0613, Predicted metal-dependent phosphoesterases (PHP family), at 123,383 to 124,240 GFF114 GFF115 - Phosphoenolpyruvate carboxylase (EC 4.1.1.31), at 124,287 to 127,127 GFF115 GFF116 - Porphobilinogen deaminase (EC 2.5.1.61), at 127,265 to 128,221 GFF116 Position (kb) 124 125 126 127 128Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 123.537 kb on + strand, within GFF114at 123.537 kb on + strand, within GFF114at 123.538 kb on - strand, within GFF114at 123.546 kb on + strand, within GFF114at 123.648 kb on + strand, within GFF114at 123.739 kb on - strand, within GFF114at 123.762 kb on + strand, within GFF114at 123.762 kb on + strand, within GFF114at 123.762 kb on + strand, within GFF114at 123.762 kb on + strand, within GFF114at 123.762 kb on + strand, within GFF114at 123.762 kb on + strand, within GFF114at 123.763 kb on - strand, within GFF114at 123.763 kb on - strand, within GFF114at 123.763 kb on - strand, within GFF114at 123.813 kb on + strand, within GFF114at 123.814 kb on - strand, within GFF114at 123.814 kb on - strand, within GFF114at 123.858 kb on + strand, within GFF114at 123.858 kb on + strand, within GFF114at 123.858 kb on + strand, within GFF114at 123.859 kb on - strand, within GFF114at 123.859 kb on - strand, within GFF114at 123.859 kb on - strand, within GFF114at 123.876 kb on + strand, within GFF114at 123.876 kb on + strand, within GFF114at 123.876 kb on + strand, within GFF114at 123.877 kb on - strand, within GFF114at 123.877 kb on - strand, within GFF114at 124.056 kb on + strand, within GFF114at 124.251 kb on + strandat 124.252 kb on - strandat 124.432 kb on + strandat 124.433 kb on - strandat 124.594 kb on + strand, within GFF115at 124.595 kb on - strand, within GFF115at 124.765 kb on + strand, within GFF115at 124.919 kb on - strand, within GFF115at 124.919 kb on - strand, within GFF115at 124.919 kb on - strand, within GFF115at 124.942 kb on + strand, within GFF115at 124.943 kb on - strand, within GFF115at 124.943 kb on - strand, within GFF115at 125.101 kb on + strand, within GFF115at 125.101 kb on + strand, within GFF115at 125.101 kb on + strand, within GFF115at 125.185 kb on + strand, within GFF115at 125.185 kb on + strand, within GFF115at 125.185 kb on + strand, within GFF115at 125.185 kb on + strand, within GFF115at 125.186 kb on - strand, within GFF115at 125.308 kb on + strand, within GFF115at 125.308 kb on + strand, within GFF115at 125.308 kb on + strand, within GFF115at 125.308 kb on + strand, within GFF115at 125.386 kb on + strand, within GFF115at 125.386 kb on + strand, within GFF115at 125.387 kb on - strand, within GFF115at 125.441 kb on - strand, within GFF115at 125.441 kb on - strand, within GFF115at 126.007 kb on + strand, within GFF115at 126.008 kb on - strand, within GFF115at 126.085 kb on + strand, within GFF115at 126.085 kb on + strand, within GFF115at 126.085 kb on + strand, within GFF115at 126.085 kb on + strand, within GFF115at 126.085 kb on + strand, within GFF115at 126.086 kb on - strand, within GFF115at 126.086 kb on - strand, within GFF115at 126.086 kb on - strand, within GFF115at 126.086 kb on - strand, within GFF115at 126.433 kb on + strand, within GFF115at 126.434 kb on - strand, within GFF115at 126.434 kb on - strand, within GFF115at 126.434 kb on - strand, within GFF115at 126.434 kb on - strand, within GFF115at 126.434 kb on - strand, within GFF115at 126.436 kb on + strand, within GFF115at 126.437 kb on - strand, within GFF115at 126.437 kb on - strand, within GFF115at 126.437 kb on - strand, within GFF115at 126.437 kb on - strand, within GFF115at 126.437 kb on - strand, within GFF115at 126.838 kb on + strand, within GFF115at 126.838 kb on + strand, within GFF115at 126.839 kb on - strand, within GFF115at 127.177 kb on + strandat 127.177 kb on + strandat 127.178 kb on - strandat 127.178 kb on - strandat 127.178 kb on - strandat 127.178 kb on - strandat 127.178 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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123,537 + GFF114 0.18 +0.2
123,537 + GFF114 0.18 +0.9
123,538 - GFF114 0.18 +0.2
123,546 + GFF114 0.19 -0.4
123,648 + GFF114 0.31 -0.3
123,739 - GFF114 0.41 -0.4
123,762 + GFF114 0.44 -0.3
123,762 + GFF114 0.44 -0.4
123,762 + GFF114 0.44 -0.0
123,762 + GFF114 0.44 -1.6
123,762 + GFF114 0.44 -0.6
123,762 + GFF114 0.44 -0.0
123,763 - GFF114 0.44 -0.1
123,763 - GFF114 0.44 -0.4
123,763 - GFF114 0.44 +0.2
123,813 + GFF114 0.50 +0.5
123,814 - GFF114 0.50 -0.3
123,814 - GFF114 0.50 -0.6
123,858 + GFF114 0.55 -0.2
123,858 + GFF114 0.55 -0.9
123,858 + GFF114 0.55 +0.4
123,859 - GFF114 0.55 -0.1
123,859 - GFF114 0.55 -0.9
123,859 - GFF114 0.55 -0.2
123,876 + GFF114 0.57 +0.4
123,876 + GFF114 0.57 -0.1
123,876 + GFF114 0.57 +0.4
123,877 - GFF114 0.58 -1.1
123,877 - GFF114 0.58 +0.5
124,056 + GFF114 0.78 -0.8
124,251 + -1.1
124,252 - -1.8
124,432 + -3.2
124,433 - -2.1
124,594 + GFF115 0.11 -3.2
124,595 - GFF115 0.11 -0.8
124,765 + GFF115 0.17 -2.9
124,919 - GFF115 0.22 +1.2
124,919 - GFF115 0.22 -2.3
124,919 - GFF115 0.22 -1.1
124,942 + GFF115 0.23 -4.3
124,943 - GFF115 0.23 -2.0
124,943 - GFF115 0.23 -3.9
125,101 + GFF115 0.29 -2.1
125,101 + GFF115 0.29 -0.9
125,101 + GFF115 0.29 -1.8
125,185 + GFF115 0.32 -1.3
125,185 + GFF115 0.32 -1.8
125,185 + GFF115 0.32 -2.3
125,185 + GFF115 0.32 -1.1
125,186 - GFF115 0.32 -2.3
125,308 + GFF115 0.36 -2.7
125,308 + GFF115 0.36 -2.2
125,308 + GFF115 0.36 -3.2
125,308 + GFF115 0.36 -2.7
125,386 + GFF115 0.39 -2.4
125,386 + GFF115 0.39 -1.3
125,387 - GFF115 0.39 -3.8
125,441 - GFF115 0.41 -2.1
125,441 - GFF115 0.41 -2.8
126,007 + GFF115 0.61 -3.8
126,008 - GFF115 0.61 -2.5
126,085 + GFF115 0.63 -3.5
126,085 + GFF115 0.63 -4.2
126,085 + GFF115 0.63 -3.2
126,085 + GFF115 0.63 -3.3
126,085 + GFF115 0.63 -4.1
126,086 - GFF115 0.63 -2.4
126,086 - GFF115 0.63 -3.8
126,086 - GFF115 0.63 -1.6
126,086 - GFF115 0.63 -3.4
126,433 + GFF115 0.76 -2.5
126,434 - GFF115 0.76 -3.3
126,434 - GFF115 0.76 -1.5
126,434 - GFF115 0.76 -4.4
126,434 - GFF115 0.76 -3.1
126,434 - GFF115 0.76 -3.9
126,436 + GFF115 0.76 -3.4
126,437 - GFF115 0.76 -1.9
126,437 - GFF115 0.76 -2.0
126,437 - GFF115 0.76 -1.8
126,437 - GFF115 0.76 -3.1
126,437 - GFF115 0.76 -3.1
126,838 + GFF115 0.90 -1.5
126,838 + GFF115 0.90 -2.5
126,839 - GFF115 0.90 -3.3
127,177 + -0.4
127,177 + +0.2
127,178 - +1.4
127,178 - -0.2
127,178 - +0.4
127,178 - +0.2
127,178 - +0.2

Or see this region's nucleotide sequence