Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1127 and GFF1128 are separated by 128 nucleotides GFF1128 and GFF1129 are separated by 97 nucleotides GFF1129 and GFF1130 overlap by 4 nucleotides
GFF1127 - Cobalt-zinc-cadmium resistance protein CzcD, at 56,851 to 57,885
GFF1127
GFF1128 - hypothetical protein, at 58,014 to 58,295
GFF1128
GFF1129 - Heavy metal RND efflux outer membrane protein, CzcC family, at 58,393 to 59,685
GFF1129
GFF1130 - Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family, at 59,682 to 61,295
GFF1130
Position (kb) 58
59
60 Strain fitness (log2 ratio) -2
-1
0
1 at 57.446 kb on - strand, within GFF1127 at 57.514 kb on + strand, within GFF1127 at 57.514 kb on + strand, within GFF1127 at 57.515 kb on - strand, within GFF1127 at 57.515 kb on - strand, within GFF1127 at 57.515 kb on - strand, within GFF1127 at 57.571 kb on + strand, within GFF1127 at 57.572 kb on - strand, within GFF1127 at 57.614 kb on + strand, within GFF1127 at 57.615 kb on - strand, within GFF1127 at 57.615 kb on - strand, within GFF1127 at 57.682 kb on + strand, within GFF1127 at 57.683 kb on - strand, within GFF1127 at 57.683 kb on - strand, within GFF1127 at 57.844 kb on + strand at 57.890 kb on + strand at 57.890 kb on + strand at 57.895 kb on + strand at 57.896 kb on - strand at 57.914 kb on + strand at 57.915 kb on - strand at 57.915 kb on - strand at 57.915 kb on - strand at 57.940 kb on + strand at 58.243 kb on + strand, within GFF1128 at 58.889 kb on + strand, within GFF1129 at 58.890 kb on - strand, within GFF1129 at 59.295 kb on + strand, within GFF1129 at 59.882 kb on + strand, within GFF1130 at 59.882 kb on + strand, within GFF1130 at 59.943 kb on + strand, within GFF1130 at 60.273 kb on + strand, within GFF1130 at 60.273 kb on + strand, within GFF1130 at 60.307 kb on - strand, within GFF1130
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 57,446 - GFF1127 0.57 +0.2 57,514 + GFF1127 0.64 -1.3 57,514 + GFF1127 0.64 -0.3 57,515 - GFF1127 0.64 +0.8 57,515 - GFF1127 0.64 -0.1 57,515 - GFF1127 0.64 +0.1 57,571 + GFF1127 0.70 +0.8 57,572 - GFF1127 0.70 -0.7 57,614 + GFF1127 0.74 +0.2 57,615 - GFF1127 0.74 +0.1 57,615 - GFF1127 0.74 +0.3 57,682 + GFF1127 0.80 -0.4 57,683 - GFF1127 0.80 +1.2 57,683 - GFF1127 0.80 +1.2 57,844 + -0.3 57,890 + +0.2 57,890 + +0.5 57,895 + -0.2 57,896 - -1.8 57,914 + +0.5 57,915 - +0.5 57,915 - +0.2 57,915 - -1.1 57,940 + +0.1 58,243 + GFF1128 0.81 +0.4 58,889 + GFF1129 0.38 +0.5 58,890 - GFF1129 0.38 +1.5 59,295 + GFF1129 0.70 +0.1 59,882 + GFF1130 0.12 +0.9 59,882 + GFF1130 0.12 -0.1 59,943 + GFF1130 0.16 +0.4 60,273 + GFF1130 0.37 +0.7 60,273 + GFF1130 0.37 +1.2 60,307 - GFF1130 0.39 -0.2
Or see this region's nucleotide sequence