Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1111

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1110 and GFF1111 overlap by 35 nucleotidesGFF1111 and GFF1112 are separated by 22 nucleotidesGFF1112 and GFF1113 overlap by 8 nucleotides GFF1110 - hypothetical protein, at 38,911 to 40,527 GFF1110 GFF1111 - Arsenate reductase (EC 1.20.4.1), at 40,493 to 40,729 GFF1111 GFF1112 - Transcriptional regulator, ArsR family, at 40,752 to 41,078 GFF1112 GFF1113 - Permease of the major facilitator superfamily, at 41,071 to 42,333 GFF1113 Position (kb) 40 41Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 39.615 kb on + strand, within GFF1110at 39.798 kb on - strand, within GFF1110at 39.821 kb on - strand, within GFF1110at 39.821 kb on - strand, within GFF1110at 39.828 kb on - strand, within GFF1110at 39.828 kb on - strand, within GFF1110at 39.828 kb on - strand, within GFF1110at 39.938 kb on + strand, within GFF1110at 39.938 kb on + strand, within GFF1110at 39.938 kb on + strand, within GFF1110at 40.088 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.095 kb on - strand, within GFF1110at 40.095 kb on - strand, within GFF1110at 40.095 kb on - strand, within GFF1110at 40.095 kb on - strand, within GFF1110at 40.118 kb on + strand, within GFF1110at 40.119 kb on - strand, within GFF1110at 40.119 kb on - strand, within GFF1110at 40.119 kb on - strand, within GFF1110at 40.119 kb on - strand, within GFF1110at 40.172 kb on + strand, within GFF1110at 40.172 kb on + strand, within GFF1110at 40.173 kb on - strand, within GFF1110at 40.221 kb on + strand, within GFF1110at 40.244 kb on + strand, within GFF1110at 40.244 kb on + strand, within GFF1110at 40.285 kb on - strand, within GFF1110at 40.292 kb on + strand, within GFF1110at 40.292 kb on + strand, within GFF1110at 40.390 kb on + strandat 40.390 kb on + strandat 40.390 kb on + strandat 40.391 kb on - strandat 40.391 kb on - strandat 40.391 kb on - strandat 40.391 kb on - strandat 40.412 kb on + strandat 40.412 kb on + strandat 40.413 kb on - strandat 40.525 kb on + strandat 40.525 kb on + strandat 40.525 kb on + strandat 40.525 kb on + strandat 40.526 kb on - strandat 40.526 kb on - strandat 40.526 kb on - strandat 40.526 kb on - strandat 40.526 kb on - strandat 40.526 kb on - strandat 40.529 kb on + strand, within GFF1111at 40.529 kb on + strand, within GFF1111at 40.529 kb on + strand, within GFF1111at 40.530 kb on - strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.539 kb on - strand, within GFF1111at 40.539 kb on - strand, within GFF1111at 40.539 kb on - strand, within GFF1111at 40.620 kb on + strand, within GFF1111at 40.620 kb on + strand, within GFF1111at 40.713 kb on + strandat 40.713 kb on + strandat 40.713 kb on + strandat 40.713 kb on + strandat 40.714 kb on - strandat 40.714 kb on - strandat 41.131 kb on + strandat 41.131 kb on + strandat 41.132 kb on - strandat 41.132 kb on - strandat 41.186 kb on + strandat 41.186 kb on + strandat 41.186 kb on + strandat 41.186 kb on + strandat 41.207 kb on + strand, within GFF1113at 41.303 kb on + strand, within GFF1113at 41.304 kb on - strand, within GFF1113at 41.318 kb on + strand, within GFF1113at 41.319 kb on - strand, within GFF1113at 41.319 kb on - strand, within GFF1113at 41.408 kb on + strand, within GFF1113at 41.408 kb on + strand, within GFF1113at 41.408 kb on + strand, within GFF1113at 41.601 kb on - strand, within GFF1113at 41.601 kb on - strand, within GFF1113

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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39,615 + GFF1110 0.44 -0.5
39,798 - GFF1110 0.55 +0.4
39,821 - GFF1110 0.56 +0.0
39,821 - GFF1110 0.56 -0.9
39,828 - GFF1110 0.57 -0.7
39,828 - GFF1110 0.57 -1.7
39,828 - GFF1110 0.57 -0.3
39,938 + GFF1110 0.64 +0.5
39,938 + GFF1110 0.64 -0.9
39,938 + GFF1110 0.64 -0.6
40,088 + GFF1110 0.73 -0.2
40,094 + GFF1110 0.73 -0.1
40,094 + GFF1110 0.73 -0.1
40,094 + GFF1110 0.73 +0.4
40,094 + GFF1110 0.73 -0.2
40,094 + GFF1110 0.73 -0.1
40,095 - GFF1110 0.73 +0.1
40,095 - GFF1110 0.73 +0.1
40,095 - GFF1110 0.73 +1.2
40,095 - GFF1110 0.73 +0.0
40,118 + GFF1110 0.75 +0.2
40,119 - GFF1110 0.75 +0.2
40,119 - GFF1110 0.75 +0.2
40,119 - GFF1110 0.75 -0.4
40,119 - GFF1110 0.75 +0.4
40,172 + GFF1110 0.78 -0.9
40,172 + GFF1110 0.78 -1.3
40,173 - GFF1110 0.78 +0.5
40,221 + GFF1110 0.81 -0.6
40,244 + GFF1110 0.82 -0.1
40,244 + GFF1110 0.82 +0.7
40,285 - GFF1110 0.85 +0.7
40,292 + GFF1110 0.85 +0.2
40,292 + GFF1110 0.85 -0.0
40,390 + +0.1
40,390 + +0.7
40,390 + +0.9
40,391 - -0.4
40,391 - -0.8
40,391 - -0.2
40,391 - +0.9
40,412 + -0.3
40,412 + -0.9
40,413 - -1.0
40,525 + -0.1
40,525 + -0.8
40,525 + +0.4
40,525 + +1.2
40,526 - +0.2
40,526 - -0.4
40,526 - +0.6
40,526 - +0.0
40,526 - -0.3
40,526 - -1.6
40,529 + GFF1111 0.15 -0.0
40,529 + GFF1111 0.15 +0.2
40,529 + GFF1111 0.15 -1.1
40,530 - GFF1111 0.16 +0.7
40,538 + GFF1111 0.19 +0.0
40,538 + GFF1111 0.19 -0.0
40,538 + GFF1111 0.19 -0.6
40,538 + GFF1111 0.19 +1.2
40,538 + GFF1111 0.19 +0.8
40,538 + GFF1111 0.19 +0.2
40,538 + GFF1111 0.19 -0.3
40,538 + GFF1111 0.19 +0.7
40,539 - GFF1111 0.19 -0.8
40,539 - GFF1111 0.19 -0.3
40,539 - GFF1111 0.19 +7.9
40,620 + GFF1111 0.54 -0.2
40,620 + GFF1111 0.54 -1.1
40,713 + +0.9
40,713 + -0.4
40,713 + +0.5
40,713 + +0.2
40,714 - -0.9
40,714 - -0.3
41,131 + -0.0
41,131 + +1.5
41,132 - -0.1
41,132 - -0.2
41,186 + -0.6
41,186 + +0.8
41,186 + +0.2
41,186 + +0.2
41,207 + GFF1113 0.11 -0.4
41,303 + GFF1113 0.18 +0.7
41,304 - GFF1113 0.18 -0.9
41,318 + GFF1113 0.20 +0.0
41,319 - GFF1113 0.20 -1.8
41,319 - GFF1113 0.20 -0.5
41,408 + GFF1113 0.27 +0.8
41,408 + GFF1113 0.27 +0.7
41,408 + GFF1113 0.27 +0.8
41,601 - GFF1113 0.42 -0.8
41,601 - GFF1113 0.42 -0.3

Or see this region's nucleotide sequence