Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1033 and GFF1034 are separated by 1 nucleotides GFF1034 and GFF1035 are separated by 136 nucleotides GFF1035 and GFF1036 are separated by 27 nucleotides
GFF1033 - Transcription elongation factor GreB, at 771,859 to 772,416
GFF1033
GFF1034 - GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2), at 772,418 to 774,667
GFF1034
GFF1035 - DNA-directed RNA polymerase omega subunit (EC 2.7.7.6), at 774,804 to 775,007
GFF1035
GFF1036 - Guanylate kinase (EC 2.7.4.8), at 775,035 to 775,655
GFF1036
Position (kb) 772
773
774
775 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 771.436 kb on + strand at 771.469 kb on + strand at 771.469 kb on + strand at 771.469 kb on + strand at 771.470 kb on - strand at 771.475 kb on - strand at 771.483 kb on + strand at 771.483 kb on + strand at 771.484 kb on - strand at 771.484 kb on - strand at 771.488 kb on + strand at 771.488 kb on + strand at 771.488 kb on + strand at 771.488 kb on + strand at 771.489 kb on - strand at 771.489 kb on - strand at 771.489 kb on - strand at 771.489 kb on - strand at 771.489 kb on - strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.490 kb on + strand at 771.491 kb on - strand at 771.491 kb on - strand at 771.491 kb on - strand at 771.491 kb on - strand at 771.491 kb on - strand at 771.491 kb on - strand at 771.491 kb on - strand at 771.491 kb on - strand at 771.494 kb on + strand at 771.494 kb on + strand at 771.495 kb on - strand at 771.504 kb on + strand at 771.504 kb on + strand at 771.504 kb on + strand at 771.504 kb on + strand at 771.505 kb on - strand at 771.505 kb on - strand at 771.505 kb on - strand at 771.578 kb on + strand at 771.579 kb on - strand at 771.622 kb on - strand at 771.622 kb on - strand at 771.622 kb on - strand at 771.672 kb on + strand at 771.672 kb on + strand at 771.672 kb on + strand at 771.672 kb on + strand at 771.672 kb on + strand at 771.672 kb on + strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.673 kb on - strand at 771.689 kb on + strand at 771.690 kb on - strand at 771.756 kb on - strand at 771.756 kb on - strand at 771.799 kb on + strand at 771.799 kb on + strand at 771.943 kb on + strand, within GFF1033 at 771.943 kb on + strand, within GFF1033 at 771.943 kb on + strand, within GFF1033 at 771.943 kb on + strand, within GFF1033 at 771.943 kb on + strand, within GFF1033 at 771.943 kb on + strand, within GFF1033 at 771.943 kb on + strand, within GFF1033 at 771.943 kb on + strand, within GFF1033 at 771.944 kb on - strand, within GFF1033 at 771.944 kb on - strand, within GFF1033 at 771.944 kb on - strand, within GFF1033 at 771.944 kb on - strand, within GFF1033 at 771.944 kb on - strand, within GFF1033 at 771.944 kb on - strand, within GFF1033 at 771.944 kb on - strand, within GFF1033 at 771.961 kb on + strand, within GFF1033 at 772.072 kb on + strand, within GFF1033 at 772.072 kb on + strand, within GFF1033 at 772.072 kb on + strand, within GFF1033 at 772.072 kb on + strand, within GFF1033 at 772.072 kb on + strand, within GFF1033 at 772.072 kb on + strand, within GFF1033 at 772.072 kb on + strand, within GFF1033 at 772.073 kb on - strand, within GFF1033 at 772.073 kb on - strand, within GFF1033 at 772.073 kb on - strand, within GFF1033 at 772.073 kb on - strand, within GFF1033 at 772.073 kb on - strand, within GFF1033 at 772.078 kb on + strand, within GFF1033 at 772.078 kb on + strand, within GFF1033 at 772.078 kb on + strand, within GFF1033 at 772.078 kb on + strand, within GFF1033 at 772.079 kb on + strand, within GFF1033 at 772.079 kb on - strand, within GFF1033 at 772.079 kb on - strand, within GFF1033 at 772.210 kb on + strand, within GFF1033 at 772.210 kb on + strand, within GFF1033 at 772.210 kb on + strand, within GFF1033 at 772.210 kb on + strand, within GFF1033 at 772.211 kb on - strand, within GFF1033 at 772.211 kb on - strand, within GFF1033 at 772.396 kb on + strand at 772.396 kb on + strand at 772.428 kb on + strand at 772.428 kb on + strand at 772.428 kb on + strand at 772.429 kb on - strand at 772.429 kb on - strand at 774.674 kb on - strand at 774.674 kb on - strand at 774.674 kb on - strand at 774.674 kb on - strand at 774.679 kb on - strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.934 kb on + strand, within GFF1035 at 774.934 kb on + strand, within GFF1035 at 774.934 kb on + strand, within GFF1035 at 775.031 kb on + strand at 775.031 kb on + strand at 775.660 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 771,436 + +0.1 771,469 + +0.2 771,469 + +0.4 771,469 + -0.4 771,470 - -3.0 771,475 - +0.2 771,483 + -1.1 771,483 + -0.9 771,484 - -0.5 771,484 - -1.8 771,488 + -0.1 771,488 + -0.2 771,488 + +0.6 771,488 + -0.8 771,489 - -1.2 771,489 - -0.1 771,489 - -0.0 771,489 - -0.1 771,489 - -0.4 771,490 + -1.6 771,490 + +1.0 771,490 + +0.5 771,490 + -0.0 771,490 + +0.5 771,490 + +1.0 771,490 + +1.2 771,490 + -4.6 771,490 + +0.3 771,491 - -0.9 771,491 - -0.7 771,491 - +0.9 771,491 - +0.2 771,491 - +1.2 771,491 - -1.3 771,491 - -0.1 771,491 - -2.5 771,494 + -0.2 771,494 + -0.4 771,495 - +0.0 771,504 + +0.0 771,504 + +0.4 771,504 + +0.6 771,504 + +0.2 771,505 - +0.5 771,505 - +0.6 771,505 - +0.1 771,578 + -0.4 771,579 - +0.4 771,622 - +0.8 771,622 - +0.2 771,622 - +0.5 771,672 + -0.3 771,672 + +0.1 771,672 + +0.3 771,672 + +0.4 771,672 + -1.0 771,672 + -0.5 771,673 - -0.8 771,673 - -1.0 771,673 - -0.2 771,673 - -0.4 771,673 - +0.1 771,673 - +0.2 771,673 - -0.2 771,673 - -0.6 771,673 - -0.1 771,673 - -0.9 771,689 + +1.2 771,690 - -0.0 771,756 - -0.3 771,756 - +0.2 771,799 + +0.1 771,799 + -0.6 771,943 + GFF1033 0.15 -0.8 771,943 + GFF1033 0.15 +0.3 771,943 + GFF1033 0.15 -0.2 771,943 + GFF1033 0.15 +0.0 771,943 + GFF1033 0.15 +0.2 771,943 + GFF1033 0.15 -0.8 771,943 + GFF1033 0.15 -0.2 771,943 + GFF1033 0.15 -0.3 771,944 - GFF1033 0.15 -1.0 771,944 - GFF1033 0.15 +1.5 771,944 - GFF1033 0.15 +1.8 771,944 - GFF1033 0.15 +0.1 771,944 - GFF1033 0.15 -1.1 771,944 - GFF1033 0.15 -0.7 771,944 - GFF1033 0.15 +0.8 771,961 + GFF1033 0.18 +0.2 772,072 + GFF1033 0.38 -0.7 772,072 + GFF1033 0.38 +0.0 772,072 + GFF1033 0.38 -0.1 772,072 + GFF1033 0.38 -0.1 772,072 + GFF1033 0.38 +0.9 772,072 + GFF1033 0.38 +0.2 772,072 + GFF1033 0.38 +0.2 772,073 - GFF1033 0.38 -0.4 772,073 - GFF1033 0.38 +0.4 772,073 - GFF1033 0.38 +0.5 772,073 - GFF1033 0.38 +0.1 772,073 - GFF1033 0.38 -0.6 772,078 + GFF1033 0.39 -0.5 772,078 + GFF1033 0.39 +0.1 772,078 + GFF1033 0.39 -0.2 772,078 + GFF1033 0.39 -0.3 772,079 + GFF1033 0.39 +0.9 772,079 - GFF1033 0.39 -1.0 772,079 - GFF1033 0.39 +0.9 772,210 + GFF1033 0.63 -1.3 772,210 + GFF1033 0.63 +0.2 772,210 + GFF1033 0.63 -0.5 772,210 + GFF1033 0.63 +0.5 772,211 - GFF1033 0.63 +1.0 772,211 - GFF1033 0.63 +0.2 772,396 + -0.2 772,396 + +0.0 772,428 + -0.0 772,428 + -0.8 772,428 + -0.2 772,429 - -0.2 772,429 - -2.4 774,674 - +0.5 774,674 - +1.4 774,674 - -0.5 774,674 - +1.5 774,679 - -0.2 774,737 + -0.4 774,737 + +0.0 774,737 + -0.9 774,737 + +0.0 774,737 + -0.8 774,737 + +1.2 774,737 + +0.2 774,737 + -0.1 774,737 + +0.2 774,737 + -0.3 774,737 + -0.9 774,737 + -1.9 774,738 - -0.1 774,738 - -0.1 774,738 - -1.5 774,738 - +1.2 774,738 - -0.1 774,738 - +0.0 774,738 - +0.2 774,738 - -1.1 774,738 - +0.2 774,738 - -0.5 774,738 - +0.5 774,738 - +0.1 774,738 - +0.2 774,738 - +1.6 774,738 - -0.5 774,738 - +0.2 774,738 - -0.5 774,738 - +0.3 774,934 + GFF1035 0.64 +0.2 774,934 + GFF1035 0.64 -1.4 774,934 + GFF1035 0.64 -0.4 775,031 + -2.8 775,031 + -2.5 775,660 - +0.0
Or see this region's nucleotide sequence