Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1027

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1026 and GFF1027 overlap by 1 nucleotidesGFF1027 and GFF1028 are separated by 110 nucleotides GFF1026 - Ferredoxin reductase, at 764,664 to 765,839 GFF1026 GFF1027 - Ferredoxin, 2Fe-2S, at 765,839 to 766,090 GFF1027 GFF1028 - putative cytochrome P450 hydroxylase, at 766,201 to 767,421 GFF1028 Position (kb) 765 766 767Strain fitness (log2 ratio) -1 0 1at 764.891 kb on - strand, within GFF1026at 765.538 kb on + strand, within GFF1026at 766.008 kb on + strand, within GFF1027at 766.008 kb on + strand, within GFF1027at 766.009 kb on - strand, within GFF1027at 766.142 kb on + strandat 766.142 kb on + strandat 766.142 kb on + strandat 766.147 kb on - strandat 766.181 kb on - strandat 766.575 kb on - strand, within GFF1028at 766.916 kb on + strand, within GFF1028

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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764,891 - GFF1026 0.19 -1.6
765,538 + GFF1026 0.74 -1.4
766,008 + GFF1027 0.67 +0.1
766,008 + GFF1027 0.67 -0.8
766,009 - GFF1027 0.67 -0.2
766,142 + -0.2
766,142 + -1.2
766,142 + -0.5
766,147 - -0.2
766,181 - +0.4
766,575 - GFF1028 0.31 -1.4
766,916 + GFF1028 0.59 -0.3

Or see this region's nucleotide sequence