Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1010

Experiment: Ying_OrganicAcid7 rep A; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1009 and GFF1010 are separated by 46 nucleotidesGFF1010 and GFF1011 are separated by 215 nucleotidesGFF1011 and GFF1012 are separated by 36 nucleotides GFF1009 - Tricarboxylate transport protein TctC, at 747,375 to 748,355 GFF1009 GFF1010 - Rieske (2Fe-2S) region, at 748,402 to 749,676 GFF1010 GFF1011 - Transcriptional regulator, IclR family, at 749,892 to 750,578 GFF1011 GFF1012 - Benzoate transport, ATP binding protein, at 750,615 to 751,337 GFF1012 Position (kb) 748 749 750Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 747.653 kb on + strand, within GFF1009at 747.654 kb on - strand, within GFF1009at 747.889 kb on + strand, within GFF1009at 747.890 kb on - strand, within GFF1009at 747.890 kb on - strand, within GFF1009at 747.890 kb on - strand, within GFF1009at 747.967 kb on + strand, within GFF1009at 747.967 kb on + strand, within GFF1009at 747.968 kb on - strand, within GFF1009at 748.021 kb on + strand, within GFF1009at 748.022 kb on - strand, within GFF1009at 748.069 kb on + strand, within GFF1009at 748.069 kb on + strand, within GFF1009at 748.117 kb on + strand, within GFF1009at 748.117 kb on + strand, within GFF1009at 748.117 kb on + strand, within GFF1009at 748.117 kb on + strand, within GFF1009at 748.118 kb on - strand, within GFF1009at 748.118 kb on - strand, within GFF1009at 748.355 kb on + strandat 748.356 kb on - strandat 748.593 kb on + strand, within GFF1010at 748.612 kb on + strand, within GFF1010at 748.665 kb on - strand, within GFF1010at 748.697 kb on + strand, within GFF1010at 748.697 kb on + strand, within GFF1010at 748.697 kb on + strand, within GFF1010at 748.698 kb on - strand, within GFF1010at 748.736 kb on + strand, within GFF1010at 748.737 kb on - strand, within GFF1010at 748.737 kb on - strand, within GFF1010at 748.804 kb on - strand, within GFF1010at 748.881 kb on + strand, within GFF1010at 748.881 kb on + strand, within GFF1010at 748.881 kb on + strand, within GFF1010at 748.881 kb on + strand, within GFF1010at 748.881 kb on + strand, within GFF1010at 748.881 kb on + strand, within GFF1010at 748.882 kb on - strand, within GFF1010at 748.882 kb on - strand, within GFF1010at 748.882 kb on - strand, within GFF1010at 749.078 kb on + strand, within GFF1010at 749.078 kb on + strand, within GFF1010at 749.078 kb on + strand, within GFF1010at 749.138 kb on + strand, within GFF1010at 749.138 kb on + strand, within GFF1010at 749.138 kb on + strand, within GFF1010at 749.139 kb on - strand, within GFF1010at 749.139 kb on - strand, within GFF1010at 749.139 kb on - strand, within GFF1010at 749.139 kb on - strand, within GFF1010at 749.139 kb on - strand, within GFF1010at 749.192 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.283 kb on + strand, within GFF1010at 749.284 kb on - strand, within GFF1010at 749.284 kb on - strand, within GFF1010at 749.284 kb on - strand, within GFF1010at 749.284 kb on - strand, within GFF1010at 749.284 kb on - strand, within GFF1010at 749.285 kb on + strand, within GFF1010at 749.285 kb on + strand, within GFF1010at 749.285 kb on + strand, within GFF1010at 749.285 kb on + strand, within GFF1010at 749.285 kb on + strand, within GFF1010at 749.286 kb on - strand, within GFF1010at 749.286 kb on - strand, within GFF1010at 749.286 kb on - strand, within GFF1010at 749.328 kb on + strand, within GFF1010at 749.329 kb on + strand, within GFF1010at 749.329 kb on + strand, within GFF1010at 749.329 kb on + strand, within GFF1010at 749.330 kb on - strand, within GFF1010at 749.330 kb on - strand, within GFF1010at 749.448 kb on - strand, within GFF1010at 749.505 kb on + strand, within GFF1010at 749.505 kb on + strand, within GFF1010at 749.505 kb on + strand, within GFF1010at 749.505 kb on + strand, within GFF1010at 749.506 kb on - strand, within GFF1010at 749.506 kb on - strand, within GFF1010at 749.506 kb on - strand, within GFF1010at 749.676 kb on + strandat 749.677 kb on - strandat 749.797 kb on - strandat 749.804 kb on + strandat 749.805 kb on - strandat 749.805 kb on - strandat 749.805 kb on - strandat 749.805 kb on - strandat 749.828 kb on + strandat 749.829 kb on - strandat 749.829 kb on - strandat 749.831 kb on - strandat 749.970 kb on + strand, within GFF1011at 749.970 kb on + strand, within GFF1011at 749.971 kb on - strand, within GFF1011at 749.971 kb on - strand, within GFF1011at 749.971 kb on - strand, within GFF1011at 749.971 kb on - strand, within GFF1011at 749.971 kb on - strand, within GFF1011at 750.040 kb on + strand, within GFF1011at 750.040 kb on + strand, within GFF1011at 750.041 kb on - strand, within GFF1011at 750.091 kb on + strand, within GFF1011at 750.091 kb on + strand, within GFF1011at 750.092 kb on - strand, within GFF1011at 750.092 kb on - strand, within GFF1011at 750.092 kb on - strand, within GFF1011at 750.092 kb on - strand, within GFF1011at 750.092 kb on - strand, within GFF1011at 750.092 kb on - strand, within GFF1011at 750.238 kb on - strand, within GFF1011at 750.307 kb on - strand, within GFF1011at 750.337 kb on + strand, within GFF1011at 750.337 kb on + strand, within GFF1011at 750.337 kb on + strand, within GFF1011at 750.338 kb on - strand, within GFF1011at 750.338 kb on - strand, within GFF1011at 750.345 kb on + strand, within GFF1011at 750.345 kb on + strand, within GFF1011at 750.345 kb on + strand, within GFF1011at 750.345 kb on + strand, within GFF1011at 750.381 kb on + strand, within GFF1011at 750.382 kb on - strand, within GFF1011at 750.382 kb on - strand, within GFF1011at 750.382 kb on - strand, within GFF1011at 750.388 kb on + strand, within GFF1011at 750.517 kb on + strandat 750.517 kb on + strandat 750.517 kb on + strandat 750.517 kb on + strandat 750.518 kb on - strandat 750.518 kb on - strandat 750.518 kb on - strandat 750.524 kb on + strandat 750.524 kb on + strandat 750.525 kb on - strandat 750.576 kb on + strandat 750.576 kb on + strandat 750.576 kb on + strandat 750.577 kb on - strandat 750.577 kb on - strandat 750.577 kb on - strandat 750.580 kb on + strandat 750.618 kb on + strandat 750.618 kb on + strandat 750.619 kb on - strandat 750.619 kb on - strandat 750.619 kb on - strandat 750.619 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
remove
747,653 + GFF1009 0.28 -0.9
747,654 - GFF1009 0.28 -0.6
747,889 + GFF1009 0.52 -0.6
747,890 - GFF1009 0.52 -0.1
747,890 - GFF1009 0.52 +1.2
747,890 - GFF1009 0.52 -0.2
747,967 + GFF1009 0.60 -0.4
747,967 + GFF1009 0.60 -0.5
747,968 - GFF1009 0.60 -0.0
748,021 + GFF1009 0.66 +1.1
748,022 - GFF1009 0.66 -1.9
748,069 + GFF1009 0.71 +0.5
748,069 + GFF1009 0.71 -0.1
748,117 + GFF1009 0.76 -0.7
748,117 + GFF1009 0.76 -0.0
748,117 + GFF1009 0.76 -0.5
748,117 + GFF1009 0.76 +0.2
748,118 - GFF1009 0.76 -0.2
748,118 - GFF1009 0.76 +0.2
748,355 + -0.1
748,356 - -0.3
748,593 + GFF1010 0.15 +0.0
748,612 + GFF1010 0.16 -1.1
748,665 - GFF1010 0.21 -2.9
748,697 + GFF1010 0.23 -0.2
748,697 + GFF1010 0.23 -0.3
748,697 + GFF1010 0.23 -0.2
748,698 - GFF1010 0.23 +0.6
748,736 + GFF1010 0.26 -0.4
748,737 - GFF1010 0.26 +1.2
748,737 - GFF1010 0.26 -0.2
748,804 - GFF1010 0.32 -0.1
748,881 + GFF1010 0.38 -0.2
748,881 + GFF1010 0.38 -0.4
748,881 + GFF1010 0.38 -0.1
748,881 + GFF1010 0.38 +0.9
748,881 + GFF1010 0.38 +0.1
748,881 + GFF1010 0.38 +0.2
748,882 - GFF1010 0.38 -0.6
748,882 - GFF1010 0.38 -0.2
748,882 - GFF1010 0.38 +1.6
749,078 + GFF1010 0.53 +0.5
749,078 + GFF1010 0.53 +0.2
749,078 + GFF1010 0.53 -2.7
749,138 + GFF1010 0.58 -0.5
749,138 + GFF1010 0.58 -1.1
749,138 + GFF1010 0.58 +0.1
749,139 - GFF1010 0.58 -0.6
749,139 - GFF1010 0.58 -1.9
749,139 - GFF1010 0.58 +0.1
749,139 - GFF1010 0.58 +0.2
749,139 - GFF1010 0.58 -0.1
749,192 + GFF1010 0.62 +0.1
749,213 + GFF1010 0.64 +0.5
749,213 + GFF1010 0.64 +0.6
749,213 + GFF1010 0.64 -0.1
749,213 + GFF1010 0.64 -0.4
749,213 + GFF1010 0.64 -0.4
749,213 + GFF1010 0.64 +0.4
749,213 + GFF1010 0.64 -0.2
749,213 + GFF1010 0.64 -0.4
749,213 + GFF1010 0.64 -1.8
749,213 + GFF1010 0.64 +0.1
749,213 + GFF1010 0.64 +1.2
749,213 + GFF1010 0.64 -0.4
749,214 - GFF1010 0.64 +1.4
749,214 - GFF1010 0.64 -0.0
749,214 - GFF1010 0.64 -0.3
749,214 - GFF1010 0.64 -0.0
749,214 - GFF1010 0.64 +0.6
749,214 - GFF1010 0.64 -1.2
749,214 - GFF1010 0.64 -0.4
749,283 + GFF1010 0.69 -0.9
749,284 - GFF1010 0.69 -1.6
749,284 - GFF1010 0.69 -1.5
749,284 - GFF1010 0.69 +0.2
749,284 - GFF1010 0.69 +0.2
749,284 - GFF1010 0.69 +0.1
749,285 + GFF1010 0.69 -0.6
749,285 + GFF1010 0.69 -1.8
749,285 + GFF1010 0.69 +0.6
749,285 + GFF1010 0.69 -0.4
749,285 + GFF1010 0.69 +1.2
749,286 - GFF1010 0.69 +0.7
749,286 - GFF1010 0.69 -1.8
749,286 - GFF1010 0.69 -0.2
749,328 + GFF1010 0.73 +0.7
749,329 + GFF1010 0.73 -0.5
749,329 + GFF1010 0.73 -0.6
749,329 + GFF1010 0.73 -0.6
749,330 - GFF1010 0.73 -0.2
749,330 - GFF1010 0.73 -1.6
749,448 - GFF1010 0.82 +0.2
749,505 + GFF1010 0.87 +0.1
749,505 + GFF1010 0.87 +0.6
749,505 + GFF1010 0.87 -0.4
749,505 + GFF1010 0.87 -1.1
749,506 - GFF1010 0.87 +0.9
749,506 - GFF1010 0.87 -0.1
749,506 - GFF1010 0.87 +0.8
749,676 + +1.1
749,677 - +0.4
749,797 - +0.0
749,804 + -0.2
749,805 - -0.3
749,805 - -0.6
749,805 - -0.5
749,805 - -0.8
749,828 + -1.6
749,829 - -0.9
749,829 - -1.8
749,831 - -0.2
749,970 + GFF1011 0.11 +1.2
749,970 + GFF1011 0.11 +0.8
749,971 - GFF1011 0.11 -0.6
749,971 - GFF1011 0.11 -0.2
749,971 - GFF1011 0.11 -1.8
749,971 - GFF1011 0.11 -0.1
749,971 - GFF1011 0.11 -1.8
750,040 + GFF1011 0.22 -1.2
750,040 + GFF1011 0.22 +0.9
750,041 - GFF1011 0.22 -0.1
750,091 + GFF1011 0.29 -2.2
750,091 + GFF1011 0.29 -0.5
750,092 - GFF1011 0.29 -1.9
750,092 - GFF1011 0.29 -2.6
750,092 - GFF1011 0.29 +0.6
750,092 - GFF1011 0.29 -1.8
750,092 - GFF1011 0.29 -3.8
750,092 - GFF1011 0.29 -1.9
750,238 - GFF1011 0.50 -1.7
750,307 - GFF1011 0.60 -1.4
750,337 + GFF1011 0.65 -0.8
750,337 + GFF1011 0.65 -0.6
750,337 + GFF1011 0.65 -1.8
750,338 - GFF1011 0.65 -1.4
750,338 - GFF1011 0.65 -2.2
750,345 + GFF1011 0.66 +0.2
750,345 + GFF1011 0.66 -1.1
750,345 + GFF1011 0.66 -1.1
750,345 + GFF1011 0.66 -1.4
750,381 + GFF1011 0.71 -1.1
750,382 - GFF1011 0.71 -1.4
750,382 - GFF1011 0.71 -2.9
750,382 - GFF1011 0.71 -0.4
750,388 + GFF1011 0.72 -1.0
750,517 + -1.2
750,517 + -2.2
750,517 + -1.4
750,517 + -1.2
750,518 - -2.3
750,518 - -0.9
750,518 - +1.8
750,524 + -0.9
750,524 + -1.1
750,525 - -1.4
750,576 + +3.2
750,576 + +0.2
750,576 + +0.2
750,577 - +0.1
750,577 - +0.8
750,577 - +0.2
750,580 + +1.2
750,618 + -0.6
750,618 + -0.3
750,619 - +1.0
750,619 - +1.8
750,619 - +0.6
750,619 - +1.8

Or see this region's nucleotide sequence