Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1000 and GFF1001 are separated by 44 nucleotides GFF1001 and GFF1002 are separated by 59 nucleotides GFF1002 and GFF1003 are separated by 1 nucleotides GFF1003 and GFF1004 are separated by 30 nucleotides
GFF1000 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 738,384 to 739,616
GFF1000
GFF1001 - benzoate degradation ring-cleavage hydrolase # FIG-predicted, at 739,661 to 740,488
GFF1001
GFF1002 - MmgE/PrpD family protein, at 740,548 to 741,960
GFF1002
GFF1003 - Enoyl-CoA hydratase (EC 4.2.1.17), at 741,962 to 742,723
GFF1003
GFF1004 - Transcriptional regulator, IclR family, at 742,754 to 743,629
GFF1004
Position (kb) 740
741
742 Strain fitness (log2 ratio) -1
0
1 at 739.614 kb on + strand at 739.854 kb on - strand, within GFF1001 at 740.043 kb on + strand, within GFF1001 at 740.044 kb on - strand, within GFF1001 at 740.044 kb on - strand, within GFF1001 at 740.301 kb on - strand, within GFF1001 at 740.493 kb on + strand at 740.494 kb on - strand at 740.540 kb on - strand at 740.549 kb on + strand at 740.549 kb on + strand at 740.550 kb on - strand at 740.550 kb on - strand at 740.635 kb on + strand at 740.635 kb on + strand at 740.635 kb on + strand at 740.659 kb on + strand at 740.659 kb on + strand at 740.747 kb on + strand, within GFF1002 at 740.872 kb on + strand, within GFF1002 at 740.992 kb on + strand, within GFF1002 at 740.992 kb on + strand, within GFF1002 at 740.992 kb on + strand, within GFF1002 at 740.992 kb on + strand, within GFF1002 at 740.993 kb on - strand, within GFF1002 at 741.641 kb on + strand, within GFF1002 at 741.642 kb on - strand, within GFF1002 at 741.864 kb on - strand at 742.212 kb on + strand, within GFF1003 at 742.213 kb on - strand, within GFF1003 at 742.224 kb on + strand, within GFF1003 at 742.414 kb on - strand, within GFF1003 at 742.414 kb on - strand, within GFF1003 at 742.419 kb on + strand, within GFF1003 at 742.704 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 739,614 + +0.2 739,854 - GFF1001 0.23 +0.5 740,043 + GFF1001 0.46 +0.5 740,044 - GFF1001 0.46 +0.4 740,044 - GFF1001 0.46 +0.1 740,301 - GFF1001 0.77 +0.3 740,493 + -0.2 740,494 - +0.6 740,540 - +1.0 740,549 + -0.6 740,549 + -1.6 740,550 - -0.0 740,550 - +0.6 740,635 + +0.3 740,635 + +0.1 740,635 + -0.3 740,659 + -1.4 740,659 + +0.4 740,747 + GFF1002 0.14 -0.5 740,872 + GFF1002 0.23 -1.5 740,992 + GFF1002 0.31 -0.4 740,992 + GFF1002 0.31 -1.4 740,992 + GFF1002 0.31 +0.4 740,992 + GFF1002 0.31 -0.2 740,993 - GFF1002 0.31 +0.4 741,641 + GFF1002 0.77 -0.8 741,642 - GFF1002 0.77 +0.3 741,864 - +0.3 742,212 + GFF1003 0.33 -1.3 742,213 - GFF1003 0.33 +0.1 742,224 + GFF1003 0.34 +0.5 742,414 - GFF1003 0.59 -0.8 742,414 - GFF1003 0.59 -1.1 742,419 + GFF1003 0.60 +0.6 742,704 + +1.2
Or see this region's nucleotide sequence