Strain Fitness in Erwinia amylovora T8 around OLJFJH_03080

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03070 and OLJFJH_03075 are separated by 4 nucleotidesOLJFJH_03075 and OLJFJH_03080 are separated by 25 nucleotidesOLJFJH_03080 and OLJFJH_03085 overlap by 37 nucleotides OLJFJH_03070: OLJFJH_03070 - type VI secretion system tip protein VgrG, at 554,677 to 556,989 _03070 OLJFJH_03075: OLJFJH_03075 - type VI secretion system lipoprotein TssJ, at 556,994 to 557,518 _03075 OLJFJH_03080: OLJFJH_03080 - type VI secretion system baseplate subunit TssG, at 557,544 to 558,626 _03080 OLJFJH_03085: OLJFJH_03085 - type VI secretion system baseplate subunit TssF, at 558,590 to 560,359 _03085 Position (kb) 557 558 559Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 556.655 kb on + strand, within OLJFJH_03070at 556.658 kb on - strand, within OLJFJH_03070at 556.711 kb on + strand, within OLJFJH_03070at 556.711 kb on + strand, within OLJFJH_03070at 556.712 kb on - strand, within OLJFJH_03070at 556.712 kb on - strand, within OLJFJH_03070at 556.715 kb on + strand, within OLJFJH_03070at 556.715 kb on + strand, within OLJFJH_03070at 556.715 kb on + strand, within OLJFJH_03070at 556.716 kb on - strand, within OLJFJH_03070at 556.716 kb on - strand, within OLJFJH_03070at 556.716 kb on - strand, within OLJFJH_03070at 556.806 kb on - strandat 556.833 kb on + strandat 556.833 kb on + strandat 556.834 kb on - strandat 557.305 kb on - strand, within OLJFJH_03075at 557.507 kb on + strandat 557.546 kb on - strandat 557.605 kb on + strandat 557.605 kb on + strandat 557.606 kb on - strandat 557.606 kb on - strandat 557.660 kb on + strand, within OLJFJH_03080at 557.691 kb on + strand, within OLJFJH_03080at 557.692 kb on - strand, within OLJFJH_03080at 557.692 kb on - strand, within OLJFJH_03080at 557.692 kb on - strand, within OLJFJH_03080at 557.740 kb on - strand, within OLJFJH_03080at 557.969 kb on + strand, within OLJFJH_03080at 558.067 kb on - strand, within OLJFJH_03080at 558.214 kb on + strand, within OLJFJH_03080at 558.214 kb on + strand, within OLJFJH_03080at 558.215 kb on - strand, within OLJFJH_03080at 558.215 kb on - strand, within OLJFJH_03080at 558.227 kb on + strand, within OLJFJH_03080at 558.575 kb on + strandat 558.661 kb on + strandat 558.674 kb on + strandat 558.675 kb on - strandat 558.797 kb on - strand, within OLJFJH_03085at 559.040 kb on + strand, within OLJFJH_03085at 559.040 kb on + strand, within OLJFJH_03085at 559.090 kb on + strand, within OLJFJH_03085at 559.121 kb on - strand, within OLJFJH_03085at 559.186 kb on + strand, within OLJFJH_03085at 559.187 kb on - strand, within OLJFJH_03085at 559.199 kb on - strand, within OLJFJH_03085at 559.200 kb on + strand, within OLJFJH_03085at 559.200 kb on + strand, within OLJFJH_03085at 559.200 kb on + strand, within OLJFJH_03085at 559.200 kb on + strand, within OLJFJH_03085at 559.201 kb on - strand, within OLJFJH_03085at 559.201 kb on - strand, within OLJFJH_03085at 559.201 kb on - strand, within OLJFJH_03085at 559.240 kb on - strand, within OLJFJH_03085at 559.298 kb on + strand, within OLJFJH_03085at 559.298 kb on + strand, within OLJFJH_03085at 559.299 kb on - strand, within OLJFJH_03085at 559.299 kb on - strand, within OLJFJH_03085at 559.302 kb on + strand, within OLJFJH_03085at 559.350 kb on + strand, within OLJFJH_03085at 559.395 kb on + strand, within OLJFJH_03085at 559.395 kb on + strand, within OLJFJH_03085at 559.489 kb on + strand, within OLJFJH_03085at 559.489 kb on + strand, within OLJFJH_03085at 559.559 kb on - strand, within OLJFJH_03085at 559.591 kb on + strand, within OLJFJH_03085at 559.621 kb on - strand, within OLJFJH_03085

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-5
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556,655 + OLJFJH_03070 0.86 +1.4
556,658 - OLJFJH_03070 0.86 -1.7
556,711 + OLJFJH_03070 0.88 -0.6
556,711 + OLJFJH_03070 0.88 +0.7
556,712 - OLJFJH_03070 0.88 -0.4
556,712 - OLJFJH_03070 0.88 +6.9
556,715 + OLJFJH_03070 0.88 -0.5
556,715 + OLJFJH_03070 0.88 +1.1
556,715 + OLJFJH_03070 0.88 +0.4
556,716 - OLJFJH_03070 0.88 +0.1
556,716 - OLJFJH_03070 0.88 +3.1
556,716 - OLJFJH_03070 0.88 +0.7
556,806 - -0.5
556,833 + +0.0
556,833 + -0.3
556,834 - -1.7
557,305 - OLJFJH_03075 0.59 +0.4
557,507 + +0.1
557,546 - +0.1
557,605 + +0.2
557,605 + +1.2
557,606 - +0.8
557,606 - +0.5
557,660 + OLJFJH_03080 0.11 -0.0
557,691 + OLJFJH_03080 0.14 -1.5
557,692 - OLJFJH_03080 0.14 -1.0
557,692 - OLJFJH_03080 0.14 -2.5
557,692 - OLJFJH_03080 0.14 +0.1
557,740 - OLJFJH_03080 0.18 -0.1
557,969 + OLJFJH_03080 0.39 -0.5
558,067 - OLJFJH_03080 0.48 +0.7
558,214 + OLJFJH_03080 0.62 -0.4
558,214 + OLJFJH_03080 0.62 +2.2
558,215 - OLJFJH_03080 0.62 -0.8
558,215 - OLJFJH_03080 0.62 -2.4
558,227 + OLJFJH_03080 0.63 -2.4
558,575 + +0.1
558,661 + +0.4
558,674 + +1.0
558,675 - +0.3
558,797 - OLJFJH_03085 0.12 +0.0
559,040 + OLJFJH_03085 0.25 +0.0
559,040 + OLJFJH_03085 0.25 -0.3
559,090 + OLJFJH_03085 0.28 -0.3
559,121 - OLJFJH_03085 0.30 +0.2
559,186 + OLJFJH_03085 0.34 +0.2
559,187 - OLJFJH_03085 0.34 +1.1
559,199 - OLJFJH_03085 0.34 +0.1
559,200 + OLJFJH_03085 0.34 +2.1
559,200 + OLJFJH_03085 0.34 -0.1
559,200 + OLJFJH_03085 0.34 +1.2
559,200 + OLJFJH_03085 0.34 -0.1
559,201 - OLJFJH_03085 0.35 -0.5
559,201 - OLJFJH_03085 0.35 +0.0
559,201 - OLJFJH_03085 0.35 +0.8
559,240 - OLJFJH_03085 0.37 -0.5
559,298 + OLJFJH_03085 0.40 -0.5
559,298 + OLJFJH_03085 0.40 +0.3
559,299 - OLJFJH_03085 0.40 +0.7
559,299 - OLJFJH_03085 0.40 +0.5
559,302 + OLJFJH_03085 0.40 -0.8
559,350 + OLJFJH_03085 0.43 -1.5
559,395 + OLJFJH_03085 0.45 +1.8
559,395 + OLJFJH_03085 0.45 -3.5
559,489 + OLJFJH_03085 0.51 +1.1
559,489 + OLJFJH_03085 0.51 -0.2
559,559 - OLJFJH_03085 0.55 +0.5
559,591 + OLJFJH_03085 0.57 -1.1
559,621 - OLJFJH_03085 0.58 +0.1

Or see this region's nucleotide sequence