Strain Fitness in Erwinia amylovora T8 around OLJFJH_15085

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15075 and OLJFJH_15080 overlap by 1 nucleotidesOLJFJH_15080 and OLJFJH_15085 overlap by 11 nucleotidesOLJFJH_15085 and OLJFJH_15090 overlap by 20 nucleotidesOLJFJH_15090 and OLJFJH_15095 overlap by 14 nucleotides OLJFJH_15075: OLJFJH_15075 - type III secretion system inner rod subunit SctI, at 3,184,141 to 3,184,464 _15075 OLJFJH_15080: OLJFJH_15080 - type III secretion inner membrane ring lipoprotein SctJ, at 3,184,464 to 3,185,243 _15080 OLJFJH_15085: OLJFJH_15085 - oxidoreductase, at 3,185,233 to 3,185,784 _15085 OLJFJH_15090: OLJFJH_15090 - Conserved uncharacterized protein, at 3,185,765 to 3,186,454 _15090 OLJFJH_15095: OLJFJH_15095 - hypothetical protein, at 3,186,441 to 3,186,542 _15095 Position (kb) 3185 3186Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3184.316 kb on + strand, within OLJFJH_15075at 3184.317 kb on - strand, within OLJFJH_15075at 3184.601 kb on + strand, within OLJFJH_15080at 3184.856 kb on - strand, within OLJFJH_15080at 3184.916 kb on - strand, within OLJFJH_15080at 3184.932 kb on + strand, within OLJFJH_15080at 3184.935 kb on - strand, within OLJFJH_15080at 3185.103 kb on - strand, within OLJFJH_15080at 3185.126 kb on + strand, within OLJFJH_15080at 3185.296 kb on - strand, within OLJFJH_15085at 3185.300 kb on - strand, within OLJFJH_15085at 3185.325 kb on + strand, within OLJFJH_15085at 3185.326 kb on - strand, within OLJFJH_15085at 3185.326 kb on - strand, within OLJFJH_15085at 3185.415 kb on - strand, within OLJFJH_15085at 3185.602 kb on - strand, within OLJFJH_15085at 3186.113 kb on + strand, within OLJFJH_15090at 3186.342 kb on + strand, within OLJFJH_15090at 3186.578 kb on - strandat 3186.748 kb on + strandat 3186.769 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-6
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3,184,316 + OLJFJH_15075 0.54 -1.4
3,184,317 - OLJFJH_15075 0.54 -2.1
3,184,601 + OLJFJH_15080 0.18 +2.0
3,184,856 - OLJFJH_15080 0.50 -0.4
3,184,916 - OLJFJH_15080 0.58 +0.4
3,184,932 + OLJFJH_15080 0.60 +0.4
3,184,935 - OLJFJH_15080 0.60 +0.6
3,185,103 - OLJFJH_15080 0.82 +0.2
3,185,126 + OLJFJH_15080 0.85 -1.0
3,185,296 - OLJFJH_15085 0.11 -1.8
3,185,300 - OLJFJH_15085 0.12 +3.3
3,185,325 + OLJFJH_15085 0.17 +1.3
3,185,326 - OLJFJH_15085 0.17 +0.3
3,185,326 - OLJFJH_15085 0.17 +0.4
3,185,415 - OLJFJH_15085 0.33 +1.4
3,185,602 - OLJFJH_15085 0.67 +0.4
3,186,113 + OLJFJH_15090 0.50 +1.8
3,186,342 + OLJFJH_15090 0.84 +3.1
3,186,578 - +0.8
3,186,748 + +0.1
3,186,769 + -0.2

Or see this region's nucleotide sequence