Strain Fitness in Erwinia amylovora T8 around OLJFJH_11655

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_11650 and OLJFJH_11655 are separated by 119 nucleotidesOLJFJH_11655 and OLJFJH_11660 are separated by 133 nucleotides OLJFJH_11650: OLJFJH_11650 - hypothetical protein, at 2,436,881 to 2,437,606 _11650 OLJFJH_11655: OLJFJH_11655 - restriction endonuclease, at 2,437,726 to 2,438,892 _11655 OLJFJH_11660: OLJFJH_11660 - DUF3320 domain-containing protein, at 2,439,026 to 2,444,539 _11660 Position (kb) 2437 2438 2439Strain fitness (log2 ratio) -2 -1 0 1 2at 2436.770 kb on + strandat 2437.128 kb on - strand, within OLJFJH_11650at 2437.587 kb on - strandat 2437.909 kb on + strand, within OLJFJH_11655at 2438.420 kb on - strand, within OLJFJH_11655at 2439.371 kb on - strandat 2439.404 kb on + strandat 2439.555 kb on + strandat 2439.555 kb on + strandat 2439.555 kb on + strandat 2439.556 kb on - strandat 2439.556 kb on - strandat 2439.709 kb on + strand, within OLJFJH_11660at 2439.850 kb on - strand, within OLJFJH_11660at 2439.850 kb on - strand, within OLJFJH_11660

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-6
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2,436,770 + +0.9
2,437,128 - OLJFJH_11650 0.34 +1.3
2,437,587 - +0.6
2,437,909 + OLJFJH_11655 0.16 +0.0
2,438,420 - OLJFJH_11655 0.59 +2.1
2,439,371 - -0.6
2,439,404 + -2.2
2,439,555 + +0.2
2,439,555 + -0.1
2,439,555 + -0.5
2,439,556 - +1.0
2,439,556 - -0.9
2,439,709 + OLJFJH_11660 0.12 +0.0
2,439,850 - OLJFJH_11660 0.15 +0.3
2,439,850 - OLJFJH_11660 0.15 +2.5

Or see this region's nucleotide sequence