Strain Fitness in Erwinia amylovora T8 around OLJFJH_10205

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10200 and OLJFJH_10205 are separated by 132 nucleotidesOLJFJH_10205 and OLJFJH_10210 are separated by 327 nucleotides OLJFJH_10200: OLJFJH_10200 - ATP-dependent RNA helicase SrmB, at 2,101,034 to 2,102,362 _10200 OLJFJH_10205: OLJFJH_10205 - SAM-dependent methyltransferase, at 2,102,495 to 2,103,232 _10205 OLJFJH_10210: OLJFJH_10210 - Aspartate oxidase, at 2,103,560 to 2,103,925 _10210 Position (kb) 2102 2103 2104Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2101.533 kb on + strand, within OLJFJH_10200at 2101.534 kb on - strand, within OLJFJH_10200at 2101.534 kb on - strand, within OLJFJH_10200at 2101.684 kb on - strand, within OLJFJH_10200at 2101.687 kb on - strand, within OLJFJH_10200at 2101.687 kb on - strand, within OLJFJH_10200at 2101.734 kb on - strand, within OLJFJH_10200at 2101.734 kb on - strand, within OLJFJH_10200at 2101.778 kb on - strand, within OLJFJH_10200at 2101.944 kb on + strand, within OLJFJH_10200at 2101.944 kb on + strand, within OLJFJH_10200at 2101.944 kb on + strand, within OLJFJH_10200at 2101.944 kb on + strand, within OLJFJH_10200at 2101.944 kb on + strand, within OLJFJH_10200at 2101.944 kb on + strand, within OLJFJH_10200at 2101.944 kb on + strand, within OLJFJH_10200at 2101.945 kb on - strand, within OLJFJH_10200at 2101.945 kb on - strand, within OLJFJH_10200at 2102.210 kb on - strand, within OLJFJH_10200at 2102.400 kb on + strandat 2102.401 kb on - strandat 2102.431 kb on + strandat 2102.432 kb on - strandat 2102.461 kb on + strandat 2102.534 kb on - strandat 2102.793 kb on + strand, within OLJFJH_10205at 2103.218 kb on + strandat 2103.219 kb on - strandat 2103.400 kb on - strandat 2103.428 kb on - strandat 2103.428 kb on - strandat 2103.434 kb on - strandat 2103.517 kb on + strandat 2103.517 kb on + strandat 2103.517 kb on + strandat 2103.517 kb on + strandat 2103.527 kb on + strandat 2103.613 kb on + strand, within OLJFJH_10210at 2103.984 kb on + strandat 2104.073 kb on - strandat 2104.084 kb on + strandat 2104.085 kb on - strandat 2104.102 kb on + strandat 2104.131 kb on + strandat 2104.131 kb on + strandat 2104.132 kb on - strandat 2104.152 kb on - strandat 2104.227 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-6
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2,101,533 + OLJFJH_10200 0.38 -1.4
2,101,534 - OLJFJH_10200 0.38 +0.5
2,101,534 - OLJFJH_10200 0.38 -1.5
2,101,684 - OLJFJH_10200 0.49 -0.4
2,101,687 - OLJFJH_10200 0.49 -1.1
2,101,687 - OLJFJH_10200 0.49 -0.3
2,101,734 - OLJFJH_10200 0.53 -1.4
2,101,734 - OLJFJH_10200 0.53 -0.2
2,101,778 - OLJFJH_10200 0.56 +0.6
2,101,944 + OLJFJH_10200 0.68 -1.4
2,101,944 + OLJFJH_10200 0.68 +0.9
2,101,944 + OLJFJH_10200 0.68 +0.5
2,101,944 + OLJFJH_10200 0.68 +0.8
2,101,944 + OLJFJH_10200 0.68 -0.9
2,101,944 + OLJFJH_10200 0.68 +0.6
2,101,944 + OLJFJH_10200 0.68 +1.1
2,101,945 - OLJFJH_10200 0.69 +3.1
2,101,945 - OLJFJH_10200 0.69 -2.4
2,102,210 - OLJFJH_10200 0.88 -1.8
2,102,400 + -0.0
2,102,401 - -0.3
2,102,431 + +0.9
2,102,432 - -0.2
2,102,461 + +0.1
2,102,534 - -0.9
2,102,793 + OLJFJH_10205 0.40 +1.1
2,103,218 + -1.0
2,103,219 - +0.5
2,103,400 - +0.6
2,103,428 - +0.1
2,103,428 - -1.6
2,103,434 - -0.3
2,103,517 + +0.2
2,103,517 + -0.1
2,103,517 + +0.5
2,103,517 + -1.3
2,103,527 + -0.9
2,103,613 + OLJFJH_10210 0.14 -0.4
2,103,984 + +0.7
2,104,073 - -0.5
2,104,084 + +0.6
2,104,085 - +0.8
2,104,102 + -2.0
2,104,131 + -0.6
2,104,131 + -1.7
2,104,132 - +0.5
2,104,152 - -1.0
2,104,227 - +0.8

Or see this region's nucleotide sequence