Strain Fitness in Erwinia amylovora T8 around OLJFJH_09930

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_09920 and OLJFJH_09925 overlap by 4 nucleotidesOLJFJH_09925 and OLJFJH_09930 overlap by 14 nucleotidesOLJFJH_09930 and OLJFJH_09935 overlap by 4 nucleotides OLJFJH_09920: OLJFJH_09920 - flagellar M-ring protein FliF, at 2,047,775 to 2,049,460 _09920 OLJFJH_09925: OLJFJH_09925 - flagellar motor switch protein FliG, at 2,049,457 to 2,050,443 _09925 OLJFJH_09930: OLJFJH_09930 - flagellar assembly protein FliH, at 2,050,430 to 2,051,140 _09930 OLJFJH_09935: OLJFJH_09935 - flagellum-specific ATP synthase FliI, at 2,051,137 to 2,052,501 _09935 Position (kb) 2050 2051 2052Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2049.577 kb on - strand, within OLJFJH_09925at 2049.578 kb on + strand, within OLJFJH_09925at 2049.578 kb on + strand, within OLJFJH_09925at 2049.578 kb on + strand, within OLJFJH_09925at 2049.579 kb on - strand, within OLJFJH_09925at 2049.579 kb on - strand, within OLJFJH_09925at 2049.579 kb on - strand, within OLJFJH_09925at 2049.579 kb on - strand, within OLJFJH_09925at 2049.579 kb on - strand, within OLJFJH_09925at 2049.579 kb on - strand, within OLJFJH_09925at 2049.589 kb on - strand, within OLJFJH_09925at 2049.673 kb on + strand, within OLJFJH_09925at 2049.673 kb on + strand, within OLJFJH_09925at 2049.673 kb on + strand, within OLJFJH_09925at 2049.802 kb on + strand, within OLJFJH_09925at 2049.802 kb on + strand, within OLJFJH_09925at 2049.947 kb on + strand, within OLJFJH_09925at 2050.279 kb on - strand, within OLJFJH_09925at 2050.379 kb on + strandat 2050.436 kb on - strandat 2050.606 kb on + strand, within OLJFJH_09930at 2050.891 kb on + strand, within OLJFJH_09930at 2050.892 kb on - strand, within OLJFJH_09930at 2050.892 kb on - strand, within OLJFJH_09930at 2051.320 kb on - strand, within OLJFJH_09935at 2051.368 kb on + strand, within OLJFJH_09935at 2051.368 kb on + strand, within OLJFJH_09935at 2051.369 kb on - strand, within OLJFJH_09935at 2051.419 kb on + strand, within OLJFJH_09935at 2051.441 kb on - strand, within OLJFJH_09935at 2051.441 kb on - strand, within OLJFJH_09935at 2051.441 kb on - strand, within OLJFJH_09935at 2051.449 kb on - strand, within OLJFJH_09935at 2051.557 kb on - strand, within OLJFJH_09935at 2051.721 kb on + strand, within OLJFJH_09935at 2051.882 kb on - strand, within OLJFJH_09935at 2051.882 kb on - strand, within OLJFJH_09935at 2052.106 kb on - strand, within OLJFJH_09935

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:28;Samp:15-6
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2,049,577 - OLJFJH_09925 0.12 +0.4
2,049,578 + OLJFJH_09925 0.12 +1.0
2,049,578 + OLJFJH_09925 0.12 -0.1
2,049,578 + OLJFJH_09925 0.12 -0.0
2,049,579 - OLJFJH_09925 0.12 +0.6
2,049,579 - OLJFJH_09925 0.12 -0.1
2,049,579 - OLJFJH_09925 0.12 -0.3
2,049,579 - OLJFJH_09925 0.12 +1.2
2,049,579 - OLJFJH_09925 0.12 -2.6
2,049,579 - OLJFJH_09925 0.12 -1.2
2,049,589 - OLJFJH_09925 0.13 +2.9
2,049,673 + OLJFJH_09925 0.22 -0.6
2,049,673 + OLJFJH_09925 0.22 -0.1
2,049,673 + OLJFJH_09925 0.22 -1.8
2,049,802 + OLJFJH_09925 0.35 +0.1
2,049,802 + OLJFJH_09925 0.35 -0.2
2,049,947 + OLJFJH_09925 0.50 -1.2
2,050,279 - OLJFJH_09925 0.83 +0.7
2,050,379 + -0.9
2,050,436 - +0.7
2,050,606 + OLJFJH_09930 0.25 +0.0
2,050,891 + OLJFJH_09930 0.65 +0.2
2,050,892 - OLJFJH_09930 0.65 +1.3
2,050,892 - OLJFJH_09930 0.65 +1.9
2,051,320 - OLJFJH_09935 0.13 -2.4
2,051,368 + OLJFJH_09935 0.17 -1.5
2,051,368 + OLJFJH_09935 0.17 -0.3
2,051,369 - OLJFJH_09935 0.17 -1.5
2,051,419 + OLJFJH_09935 0.21 +2.9
2,051,441 - OLJFJH_09935 0.22 +1.1
2,051,441 - OLJFJH_09935 0.22 +0.0
2,051,441 - OLJFJH_09935 0.22 +0.7
2,051,449 - OLJFJH_09935 0.23 +0.4
2,051,557 - OLJFJH_09935 0.31 -2.7
2,051,721 + OLJFJH_09935 0.43 +4.3
2,051,882 - OLJFJH_09935 0.55 +0.9
2,051,882 - OLJFJH_09935 0.55 -0.0
2,052,106 - OLJFJH_09935 0.71 -0.6

Or see this region's nucleotide sequence