Strain Fitness in Erwinia amylovora T8 around OLJFJH_15050

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15045 and OLJFJH_15050 are separated by 40 nucleotidesOLJFJH_15050 and OLJFJH_15055 are separated by 10 nucleotides OLJFJH_15045: OLJFJH_15045 - EscV/YscV/HrcV family type III secretion system export apparatus protein, at 3,176,389 to 3,178,458 _15045 OLJFJH_15050: OLJFJH_15050 - invasion protein, at 3,178,499 to 3,179,611 _15050 OLJFJH_15055: OLJFJH_15055 - type III secretion system outer membrane ring subunit SctC, at 3,179,622 to 3,181,388 _15055 Position (kb) 3178 3179 3180Strain fitness (log2 ratio) -2 -1 0 1at 3177.772 kb on + strand, within OLJFJH_15045at 3178.393 kb on - strandat 3178.753 kb on + strand, within OLJFJH_15050at 3178.962 kb on - strand, within OLJFJH_15050at 3179.885 kb on + strand, within OLJFJH_15055at 3179.886 kb on - strand, within OLJFJH_15055at 3180.019 kb on - strand, within OLJFJH_15055at 3180.257 kb on + strand, within OLJFJH_15055at 3180.606 kb on - strand, within OLJFJH_15055

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
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3,177,772 + OLJFJH_15045 0.67 -0.7
3,178,393 - +0.1
3,178,753 + OLJFJH_15050 0.23 -0.5
3,178,962 - OLJFJH_15050 0.42 -1.8
3,179,885 + OLJFJH_15055 0.15 -0.7
3,179,886 - OLJFJH_15055 0.15 -0.4
3,180,019 - OLJFJH_15055 0.22 +0.4
3,180,257 + OLJFJH_15055 0.36 +0.7
3,180,606 - OLJFJH_15055 0.56 +0.8

Or see this region's nucleotide sequence