Strain Fitness in Erwinia amylovora T8 around OLJFJH_14925

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_14920 and OLJFJH_14925 are separated by 125 nucleotidesOLJFJH_14925 and OLJFJH_14930 overlap by 126 nucleotidesOLJFJH_14930 and OLJFJH_14935 are separated by 266 nucleotides OLJFJH_14920: OLJFJH_14920 - ribose-phosphate diphosphokinase, at 3,151,432 to 3,152,379 _14920 OLJFJH_14925: OLJFJH_14925 - hypothetical protein, at 3,152,505 to 3,152,819 _14925 OLJFJH_14930: OLJFJH_14930 - stress-induced protein YchH, at 3,152,694 to 3,152,981 _14930 OLJFJH_14935: OLJFJH_14935 - aminoacyl-tRNA hydrolase, at 3,153,248 to 3,153,835 _14935 Position (kb) 3152 3153Strain fitness (log2 ratio) -1 0 1 2 3at 3152.439 kb on - strandat 3152.550 kb on + strand, within OLJFJH_14925at 3152.551 kb on - strand, within OLJFJH_14925at 3152.710 kb on + strandat 3152.793 kb on + strandat 3152.793 kb on + strandat 3152.794 kb on - strandat 3152.858 kb on + strand, within OLJFJH_14930at 3152.859 kb on - strand, within OLJFJH_14930at 3152.948 kb on + strand, within OLJFJH_14930at 3152.949 kb on - strand, within OLJFJH_14930at 3152.949 kb on - strand, within OLJFJH_14930at 3152.949 kb on - strand, within OLJFJH_14930at 3153.104 kb on - strandat 3153.134 kb on - strandat 3153.138 kb on - strandat 3153.158 kb on + strandat 3153.158 kb on + strandat 3153.171 kb on - strandat 3153.227 kb on + strandat 3153.802 kb on + strandat 3153.802 kb on + strandat 3153.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
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3,152,439 - -0.6
3,152,550 + OLJFJH_14925 0.14 -1.4
3,152,551 - OLJFJH_14925 0.15 -1.1
3,152,710 + -0.3
3,152,793 + -1.1
3,152,793 + -1.4
3,152,794 - +0.2
3,152,858 + OLJFJH_14930 0.57 -0.9
3,152,859 - OLJFJH_14930 0.57 +0.3
3,152,948 + OLJFJH_14930 0.88 -0.6
3,152,949 - OLJFJH_14930 0.89 +0.8
3,152,949 - OLJFJH_14930 0.89 +0.5
3,152,949 - OLJFJH_14930 0.89 -0.2
3,153,104 - +3.1
3,153,134 - -0.6
3,153,138 - +0.7
3,153,158 + +1.4
3,153,158 + +0.1
3,153,171 - +1.2
3,153,227 + +0.8
3,153,802 + +0.2
3,153,802 + +1.1
3,153,803 - +0.1

Or see this region's nucleotide sequence