Strain Fitness in Erwinia amylovora T8 around OLJFJH_13470

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_13460 and OLJFJH_13465 are separated by 48 nucleotidesOLJFJH_13465 and OLJFJH_13470 are separated by 150 nucleotidesOLJFJH_13470 and OLJFJH_13475 overlap by 1 nucleotides OLJFJH_13460: OLJFJH_13460 - outer membrane protein OmpW, at 2,833,556 to 2,834,188 _13460 OLJFJH_13465: OLJFJH_13465 - BON domain-containing protein, at 2,834,237 to 2,834,551 _13465 OLJFJH_13470: OLJFJH_13470 - tryptophan synthase subunit alpha, at 2,834,702 to 2,835,508 _13470 OLJFJH_13475: OLJFJH_13475 - tryptophan synthase subunit beta, at 2,835,508 to 2,836,698 _13475 Position (kb) 2834 2835 2836Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2833.875 kb on - strand, within OLJFJH_13460at 2833.875 kb on - strand, within OLJFJH_13460at 2833.875 kb on - strand, within OLJFJH_13460at 2833.894 kb on + strand, within OLJFJH_13460at 2833.894 kb on + strand, within OLJFJH_13460at 2833.928 kb on + strand, within OLJFJH_13460at 2833.941 kb on - strand, within OLJFJH_13460at 2834.078 kb on + strand, within OLJFJH_13460at 2834.078 kb on + strand, within OLJFJH_13460at 2834.157 kb on + strandat 2834.242 kb on + strandat 2834.243 kb on - strandat 2834.243 kb on - strandat 2834.252 kb on - strandat 2834.396 kb on - strand, within OLJFJH_13465at 2834.447 kb on - strand, within OLJFJH_13465at 2834.449 kb on - strand, within OLJFJH_13465at 2834.499 kb on - strand, within OLJFJH_13465at 2834.586 kb on - strandat 2834.668 kb on - strandat 2834.816 kb on - strand, within OLJFJH_13470at 2834.869 kb on + strand, within OLJFJH_13470at 2834.902 kb on - strand, within OLJFJH_13470at 2834.985 kb on + strand, within OLJFJH_13470at 2834.986 kb on - strand, within OLJFJH_13470at 2834.986 kb on - strand, within OLJFJH_13470at 2834.989 kb on + strand, within OLJFJH_13470at 2834.989 kb on + strand, within OLJFJH_13470at 2834.989 kb on + strand, within OLJFJH_13470at 2834.989 kb on + strand, within OLJFJH_13470at 2834.989 kb on + strand, within OLJFJH_13470at 2834.990 kb on - strand, within OLJFJH_13470at 2834.990 kb on - strand, within OLJFJH_13470at 2835.053 kb on - strand, within OLJFJH_13470at 2835.166 kb on - strand, within OLJFJH_13470at 2835.173 kb on - strand, within OLJFJH_13470at 2835.234 kb on + strand, within OLJFJH_13470at 2835.247 kb on + strand, within OLJFJH_13470at 2835.587 kb on - strandat 2835.727 kb on + strand, within OLJFJH_13475at 2835.727 kb on + strand, within OLJFJH_13475at 2835.728 kb on - strand, within OLJFJH_13475at 2835.731 kb on + strand, within OLJFJH_13475at 2835.731 kb on + strand, within OLJFJH_13475at 2835.731 kb on + strand, within OLJFJH_13475at 2835.731 kb on + strand, within OLJFJH_13475at 2835.732 kb on - strand, within OLJFJH_13475at 2835.732 kb on - strand, within OLJFJH_13475at 2835.867 kb on - strand, within OLJFJH_13475at 2835.919 kb on - strand, within OLJFJH_13475at 2835.996 kb on + strand, within OLJFJH_13475at 2835.997 kb on - strand, within OLJFJH_13475at 2836.065 kb on + strand, within OLJFJH_13475at 2836.143 kb on + strand, within OLJFJH_13475at 2836.144 kb on - strand, within OLJFJH_13475at 2836.145 kb on + strand, within OLJFJH_13475at 2836.145 kb on + strand, within OLJFJH_13475at 2836.145 kb on + strand, within OLJFJH_13475at 2836.145 kb on + strand, within OLJFJH_13475at 2836.146 kb on - strand, within OLJFJH_13475at 2836.146 kb on - strand, within OLJFJH_13475at 2836.146 kb on - strand, within OLJFJH_13475at 2836.146 kb on - strand, within OLJFJH_13475at 2836.146 kb on - strand, within OLJFJH_13475at 2836.160 kb on + strand, within OLJFJH_13475at 2836.265 kb on - strand, within OLJFJH_13475at 2836.285 kb on + strand, within OLJFJH_13475at 2836.285 kb on + strand, within OLJFJH_13475at 2836.286 kb on - strand, within OLJFJH_13475at 2836.286 kb on - strand, within OLJFJH_13475at 2836.287 kb on + strand, within OLJFJH_13475at 2836.288 kb on - strand, within OLJFJH_13475at 2836.302 kb on + strand, within OLJFJH_13475at 2836.303 kb on - strand, within OLJFJH_13475at 2836.304 kb on + strand, within OLJFJH_13475at 2836.304 kb on + strand, within OLJFJH_13475at 2836.305 kb on - strand, within OLJFJH_13475at 2836.305 kb on - strand, within OLJFJH_13475at 2836.305 kb on - strand, within OLJFJH_13475at 2836.305 kb on - strand, within OLJFJH_13475at 2836.305 kb on - strand, within OLJFJH_13475at 2836.305 kb on - strand, within OLJFJH_13475at 2836.305 kb on - strand, within OLJFJH_13475at 2836.384 kb on - strand, within OLJFJH_13475

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
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2,833,875 - OLJFJH_13460 0.50 -2.8
2,833,875 - OLJFJH_13460 0.50 +0.6
2,833,875 - OLJFJH_13460 0.50 -0.5
2,833,894 + OLJFJH_13460 0.53 +0.1
2,833,894 + OLJFJH_13460 0.53 -2.9
2,833,928 + OLJFJH_13460 0.59 -2.0
2,833,941 - OLJFJH_13460 0.61 +2.7
2,834,078 + OLJFJH_13460 0.82 -0.5
2,834,078 + OLJFJH_13460 0.82 -3.0
2,834,157 + -0.8
2,834,242 + -2.6
2,834,243 - +0.6
2,834,243 - -1.4
2,834,252 - +0.7
2,834,396 - OLJFJH_13465 0.50 +2.0
2,834,447 - OLJFJH_13465 0.67 +0.8
2,834,449 - OLJFJH_13465 0.67 -0.0
2,834,499 - OLJFJH_13465 0.83 +5.1
2,834,586 - -0.5
2,834,668 - -0.2
2,834,816 - OLJFJH_13470 0.14 +0.2
2,834,869 + OLJFJH_13470 0.21 -1.3
2,834,902 - OLJFJH_13470 0.25 -0.7
2,834,985 + OLJFJH_13470 0.35 -0.7
2,834,986 - OLJFJH_13470 0.35 -1.0
2,834,986 - OLJFJH_13470 0.35 -1.4
2,834,989 + OLJFJH_13470 0.36 -1.0
2,834,989 + OLJFJH_13470 0.36 -0.9
2,834,989 + OLJFJH_13470 0.36 -0.4
2,834,989 + OLJFJH_13470 0.36 -1.0
2,834,989 + OLJFJH_13470 0.36 -1.8
2,834,990 - OLJFJH_13470 0.36 -0.7
2,834,990 - OLJFJH_13470 0.36 -1.8
2,835,053 - OLJFJH_13470 0.43 -1.4
2,835,166 - OLJFJH_13470 0.57 -1.0
2,835,173 - OLJFJH_13470 0.58 -1.0
2,835,234 + OLJFJH_13470 0.66 -1.0
2,835,247 + OLJFJH_13470 0.68 -0.8
2,835,587 - -1.1
2,835,727 + OLJFJH_13475 0.18 -0.5
2,835,727 + OLJFJH_13475 0.18 -0.8
2,835,728 - OLJFJH_13475 0.18 -3.4
2,835,731 + OLJFJH_13475 0.19 -0.6
2,835,731 + OLJFJH_13475 0.19 -0.6
2,835,731 + OLJFJH_13475 0.19 -0.4
2,835,731 + OLJFJH_13475 0.19 -0.6
2,835,732 - OLJFJH_13475 0.19 -1.3
2,835,732 - OLJFJH_13475 0.19 -1.2
2,835,867 - OLJFJH_13475 0.30 -0.2
2,835,919 - OLJFJH_13475 0.35 -2.6
2,835,996 + OLJFJH_13475 0.41 -0.1
2,835,997 - OLJFJH_13475 0.41 -1.7
2,836,065 + OLJFJH_13475 0.47 -0.8
2,836,143 + OLJFJH_13475 0.53 +1.2
2,836,144 - OLJFJH_13475 0.53 -0.2
2,836,145 + OLJFJH_13475 0.53 -0.5
2,836,145 + OLJFJH_13475 0.53 +0.5
2,836,145 + OLJFJH_13475 0.53 -1.1
2,836,145 + OLJFJH_13475 0.53 -1.1
2,836,146 - OLJFJH_13475 0.54 -1.2
2,836,146 - OLJFJH_13475 0.54 -0.9
2,836,146 - OLJFJH_13475 0.54 -2.1
2,836,146 - OLJFJH_13475 0.54 -0.9
2,836,146 - OLJFJH_13475 0.54 +0.6
2,836,160 + OLJFJH_13475 0.55 -2.4
2,836,265 - OLJFJH_13475 0.64 -2.1
2,836,285 + OLJFJH_13475 0.65 +0.0
2,836,285 + OLJFJH_13475 0.65 -2.1
2,836,286 - OLJFJH_13475 0.65 -0.8
2,836,286 - OLJFJH_13475 0.65 -2.1
2,836,287 + OLJFJH_13475 0.65 -0.8
2,836,288 - OLJFJH_13475 0.65 -2.3
2,836,302 + OLJFJH_13475 0.67 -1.5
2,836,303 - OLJFJH_13475 0.67 -0.9
2,836,304 + OLJFJH_13475 0.67 -1.4
2,836,304 + OLJFJH_13475 0.67 +1.1
2,836,305 - OLJFJH_13475 0.67 -1.7
2,836,305 - OLJFJH_13475 0.67 -1.6
2,836,305 - OLJFJH_13475 0.67 -1.1
2,836,305 - OLJFJH_13475 0.67 -1.5
2,836,305 - OLJFJH_13475 0.67 -1.2
2,836,305 - OLJFJH_13475 0.67 -1.6
2,836,305 - OLJFJH_13475 0.67 -1.1
2,836,384 - OLJFJH_13475 0.74 -0.6

Or see this region's nucleotide sequence