Strain Fitness in Erwinia amylovora T8 around OLJFJH_11460

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_11445 and OLJFJH_11450 are separated by 10 nucleotidesOLJFJH_11450 and OLJFJH_11455 overlap by 4 nucleotidesOLJFJH_11455 and OLJFJH_11460 overlap by 4 nucleotidesOLJFJH_11460 and OLJFJH_11465 are separated by 212 nucleotides OLJFJH_11445: OLJFJH_11445 - NADH-quinone oxidoreductase subunit NuoI, at 2,388,976 to 2,389,518 _11445 OLJFJH_11450: OLJFJH_11450 - NADH-quinone oxidoreductase subunit J, at 2,389,529 to 2,390,083 _11450 OLJFJH_11455: OLJFJH_11455 - NADH-quinone oxidoreductase subunit NuoK, at 2,390,080 to 2,390,382 _11455 OLJFJH_11460: OLJFJH_11460 - NADH-quinone oxidoreductase subunit L, at 2,390,379 to 2,392,217 _11460 OLJFJH_11465: OLJFJH_11465 - NADH-quinone oxidoreductase subunit M, at 2,392,430 to 2,393,950 _11465 Position (kb) 2390 2391 2392 2393Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2389.418 kb on - strand, within OLJFJH_11445at 2389.419 kb on + strand, within OLJFJH_11445at 2389.420 kb on - strand, within OLJFJH_11445at 2389.511 kb on + strandat 2389.545 kb on - strandat 2389.606 kb on - strand, within OLJFJH_11450at 2389.620 kb on - strand, within OLJFJH_11450at 2389.674 kb on - strand, within OLJFJH_11450at 2389.696 kb on + strand, within OLJFJH_11450at 2389.718 kb on - strand, within OLJFJH_11450at 2389.853 kb on + strand, within OLJFJH_11450at 2389.853 kb on + strand, within OLJFJH_11450at 2389.854 kb on - strand, within OLJFJH_11450at 2389.854 kb on - strand, within OLJFJH_11450at 2389.854 kb on - strand, within OLJFJH_11450at 2389.938 kb on - strand, within OLJFJH_11450at 2389.938 kb on - strand, within OLJFJH_11450at 2390.063 kb on - strandat 2390.103 kb on + strandat 2390.104 kb on - strandat 2390.170 kb on - strand, within OLJFJH_11455at 2390.233 kb on + strand, within OLJFJH_11455at 2390.391 kb on + strandat 2390.395 kb on + strandat 2390.395 kb on + strandat 2390.518 kb on - strandat 2390.678 kb on + strand, within OLJFJH_11460at 2390.678 kb on + strand, within OLJFJH_11460at 2390.678 kb on + strand, within OLJFJH_11460at 2390.679 kb on - strand, within OLJFJH_11460at 2390.679 kb on - strand, within OLJFJH_11460at 2390.679 kb on - strand, within OLJFJH_11460at 2390.694 kb on + strand, within OLJFJH_11460at 2390.694 kb on + strand, within OLJFJH_11460at 2390.694 kb on + strand, within OLJFJH_11460at 2390.694 kb on + strand, within OLJFJH_11460at 2390.695 kb on - strand, within OLJFJH_11460at 2390.695 kb on - strand, within OLJFJH_11460at 2390.696 kb on + strand, within OLJFJH_11460at 2390.696 kb on + strand, within OLJFJH_11460at 2390.696 kb on + strand, within OLJFJH_11460at 2390.697 kb on - strand, within OLJFJH_11460at 2390.697 kb on - strand, within OLJFJH_11460at 2390.697 kb on - strand, within OLJFJH_11460at 2390.697 kb on - strand, within OLJFJH_11460at 2390.715 kb on + strand, within OLJFJH_11460at 2390.736 kb on - strand, within OLJFJH_11460at 2390.796 kb on + strand, within OLJFJH_11460at 2390.796 kb on + strand, within OLJFJH_11460at 2390.796 kb on + strand, within OLJFJH_11460at 2390.797 kb on - strand, within OLJFJH_11460at 2390.829 kb on + strand, within OLJFJH_11460at 2390.829 kb on + strand, within OLJFJH_11460at 2390.829 kb on + strand, within OLJFJH_11460at 2390.830 kb on - strand, within OLJFJH_11460at 2390.830 kb on - strand, within OLJFJH_11460at 2390.830 kb on - strand, within OLJFJH_11460at 2390.847 kb on + strand, within OLJFJH_11460at 2390.848 kb on - strand, within OLJFJH_11460at 2390.850 kb on + strand, within OLJFJH_11460at 2390.850 kb on + strand, within OLJFJH_11460at 2390.851 kb on - strand, within OLJFJH_11460at 2390.943 kb on + strand, within OLJFJH_11460at 2391.017 kb on + strand, within OLJFJH_11460at 2391.017 kb on + strand, within OLJFJH_11460at 2391.017 kb on + strand, within OLJFJH_11460at 2391.017 kb on + strand, within OLJFJH_11460at 2391.017 kb on + strand, within OLJFJH_11460at 2391.017 kb on + strand, within OLJFJH_11460at 2391.018 kb on - strand, within OLJFJH_11460at 2391.018 kb on - strand, within OLJFJH_11460at 2391.018 kb on - strand, within OLJFJH_11460at 2391.306 kb on + strand, within OLJFJH_11460at 2391.331 kb on - strand, within OLJFJH_11460at 2391.332 kb on + strand, within OLJFJH_11460at 2391.332 kb on + strand, within OLJFJH_11460at 2391.332 kb on + strand, within OLJFJH_11460at 2391.332 kb on + strand, within OLJFJH_11460at 2391.332 kb on + strand, within OLJFJH_11460at 2391.333 kb on - strand, within OLJFJH_11460at 2391.333 kb on - strand, within OLJFJH_11460at 2391.333 kb on - strand, within OLJFJH_11460at 2391.505 kb on - strand, within OLJFJH_11460at 2391.505 kb on - strand, within OLJFJH_11460at 2391.647 kb on + strand, within OLJFJH_11460at 2391.660 kb on + strand, within OLJFJH_11460at 2391.660 kb on + strand, within OLJFJH_11460at 2391.680 kb on + strand, within OLJFJH_11460at 2391.681 kb on - strand, within OLJFJH_11460at 2391.812 kb on - strand, within OLJFJH_11460at 2392.011 kb on + strand, within OLJFJH_11460at 2392.012 kb on - strand, within OLJFJH_11460at 2392.035 kb on + strandat 2392.215 kb on + strandat 2392.225 kb on + strandat 2392.225 kb on + strandat 2392.225 kb on + strandat 2392.226 kb on - strandat 2392.226 kb on - strandat 2392.226 kb on - strandat 2392.226 kb on - strandat 2392.226 kb on - strandat 2392.339 kb on + strandat 2392.339 kb on + strandat 2392.339 kb on + strandat 2392.339 kb on + strandat 2392.340 kb on - strandat 2392.343 kb on + strandat 2392.343 kb on + strandat 2392.343 kb on + strandat 2392.343 kb on + strandat 2392.343 kb on + strandat 2392.343 kb on + strandat 2392.343 kb on + strandat 2392.343 kb on + strandat 2392.344 kb on - strandat 2392.344 kb on - strandat 2392.344 kb on - strandat 2392.344 kb on - strandat 2392.344 kb on - strandat 2392.344 kb on - strandat 2392.344 kb on - strandat 2392.344 kb on - strandat 2392.344 kb on - strandat 2392.347 kb on + strandat 2392.348 kb on - strandat 2392.348 kb on - strandat 2392.348 kb on - strandat 2392.394 kb on + strandat 2392.434 kb on + strandat 2392.434 kb on + strandat 2392.434 kb on + strandat 2392.435 kb on - strandat 2392.435 kb on - strandat 2392.448 kb on - strandat 2392.452 kb on + strandat 2392.452 kb on + strandat 2392.452 kb on + strandat 2392.452 kb on + strandat 2392.452 kb on + strandat 2392.453 kb on - strandat 2392.455 kb on + strandat 2392.881 kb on - strand, within OLJFJH_11465at 2392.954 kb on + strand, within OLJFJH_11465at 2392.958 kb on + strand, within OLJFJH_11465at 2392.959 kb on - strand, within OLJFJH_11465at 2392.959 kb on - strand, within OLJFJH_11465at 2392.959 kb on - strand, within OLJFJH_11465at 2392.959 kb on - strand, within OLJFJH_11465at 2392.959 kb on - strand, within OLJFJH_11465at 2392.959 kb on - strand, within OLJFJH_11465at 2393.048 kb on + strand, within OLJFJH_11465

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
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2,389,418 - OLJFJH_11445 0.81 -0.8
2,389,419 + OLJFJH_11445 0.82 -1.5
2,389,420 - OLJFJH_11445 0.82 -1.4
2,389,511 + -1.6
2,389,545 - -1.0
2,389,606 - OLJFJH_11450 0.14 -1.9
2,389,620 - OLJFJH_11450 0.16 -0.6
2,389,674 - OLJFJH_11450 0.26 -1.9
2,389,696 + OLJFJH_11450 0.30 -1.8
2,389,718 - OLJFJH_11450 0.34 -1.0
2,389,853 + OLJFJH_11450 0.58 -2.0
2,389,853 + OLJFJH_11450 0.58 -0.9
2,389,854 - OLJFJH_11450 0.59 +2.0
2,389,854 - OLJFJH_11450 0.59 -0.0
2,389,854 - OLJFJH_11450 0.59 -0.3
2,389,938 - OLJFJH_11450 0.74 -0.2
2,389,938 - OLJFJH_11450 0.74 -1.1
2,390,063 - -0.4
2,390,103 + +0.8
2,390,104 - -2.3
2,390,170 - OLJFJH_11455 0.30 -2.3
2,390,233 + OLJFJH_11455 0.50 -1.5
2,390,391 + -2.3
2,390,395 + -2.2
2,390,395 + -0.9
2,390,518 - -2.5
2,390,678 + OLJFJH_11460 0.16 -0.8
2,390,678 + OLJFJH_11460 0.16 +0.3
2,390,678 + OLJFJH_11460 0.16 -1.5
2,390,679 - OLJFJH_11460 0.16 -0.4
2,390,679 - OLJFJH_11460 0.16 -1.0
2,390,679 - OLJFJH_11460 0.16 -1.6
2,390,694 + OLJFJH_11460 0.17 -0.6
2,390,694 + OLJFJH_11460 0.17 -0.3
2,390,694 + OLJFJH_11460 0.17 -0.2
2,390,694 + OLJFJH_11460 0.17 -1.1
2,390,695 - OLJFJH_11460 0.17 +1.5
2,390,695 - OLJFJH_11460 0.17 -1.3
2,390,696 + OLJFJH_11460 0.17 -0.9
2,390,696 + OLJFJH_11460 0.17 -1.4
2,390,696 + OLJFJH_11460 0.17 +2.0
2,390,697 - OLJFJH_11460 0.17 -0.5
2,390,697 - OLJFJH_11460 0.17 -1.4
2,390,697 - OLJFJH_11460 0.17 +0.6
2,390,697 - OLJFJH_11460 0.17 -0.7
2,390,715 + OLJFJH_11460 0.18 -1.0
2,390,736 - OLJFJH_11460 0.19 -0.5
2,390,796 + OLJFJH_11460 0.23 -1.6
2,390,796 + OLJFJH_11460 0.23 +0.8
2,390,796 + OLJFJH_11460 0.23 -0.4
2,390,797 - OLJFJH_11460 0.23 +1.4
2,390,829 + OLJFJH_11460 0.24 -1.3
2,390,829 + OLJFJH_11460 0.24 -0.6
2,390,829 + OLJFJH_11460 0.24 -2.0
2,390,830 - OLJFJH_11460 0.25 -0.4
2,390,830 - OLJFJH_11460 0.25 -2.6
2,390,830 - OLJFJH_11460 0.25 +0.2
2,390,847 + OLJFJH_11460 0.25 -2.3
2,390,848 - OLJFJH_11460 0.26 +1.6
2,390,850 + OLJFJH_11460 0.26 -1.1
2,390,850 + OLJFJH_11460 0.26 -0.1
2,390,851 - OLJFJH_11460 0.26 -1.5
2,390,943 + OLJFJH_11460 0.31 -0.6
2,391,017 + OLJFJH_11460 0.35 -3.7
2,391,017 + OLJFJH_11460 0.35 -1.6
2,391,017 + OLJFJH_11460 0.35 -1.1
2,391,017 + OLJFJH_11460 0.35 -1.9
2,391,017 + OLJFJH_11460 0.35 -1.2
2,391,017 + OLJFJH_11460 0.35 -0.1
2,391,018 - OLJFJH_11460 0.35 -1.7
2,391,018 - OLJFJH_11460 0.35 +1.0
2,391,018 - OLJFJH_11460 0.35 -0.3
2,391,306 + OLJFJH_11460 0.50 -0.4
2,391,331 - OLJFJH_11460 0.52 -2.0
2,391,332 + OLJFJH_11460 0.52 -1.3
2,391,332 + OLJFJH_11460 0.52 -0.8
2,391,332 + OLJFJH_11460 0.52 -0.7
2,391,332 + OLJFJH_11460 0.52 -1.9
2,391,332 + OLJFJH_11460 0.52 -2.5
2,391,333 - OLJFJH_11460 0.52 -1.4
2,391,333 - OLJFJH_11460 0.52 -0.8
2,391,333 - OLJFJH_11460 0.52 -0.0
2,391,505 - OLJFJH_11460 0.61 -2.3
2,391,505 - OLJFJH_11460 0.61 -2.6
2,391,647 + OLJFJH_11460 0.69 -0.4
2,391,660 + OLJFJH_11460 0.70 +0.0
2,391,660 + OLJFJH_11460 0.70 -1.1
2,391,680 + OLJFJH_11460 0.71 +0.3
2,391,681 - OLJFJH_11460 0.71 -1.4
2,391,812 - OLJFJH_11460 0.78 +1.5
2,392,011 + OLJFJH_11460 0.89 -0.7
2,392,012 - OLJFJH_11460 0.89 -2.2
2,392,035 + +1.8
2,392,215 + -0.4
2,392,225 + +0.7
2,392,225 + +0.6
2,392,225 + -0.7
2,392,226 - -2.6
2,392,226 - -0.7
2,392,226 - -0.2
2,392,226 - +0.6
2,392,226 - -2.4
2,392,339 + -0.4
2,392,339 + -0.2
2,392,339 + +0.5
2,392,339 + +1.1
2,392,340 - +0.2
2,392,343 + -0.9
2,392,343 + -1.8
2,392,343 + -0.0
2,392,343 + -1.6
2,392,343 + -0.3
2,392,343 + -1.3
2,392,343 + -1.1
2,392,343 + -3.7
2,392,344 - +1.3
2,392,344 - -0.2
2,392,344 - +2.0
2,392,344 - +0.9
2,392,344 - -0.6
2,392,344 - -2.7
2,392,344 - -0.3
2,392,344 - -0.4
2,392,344 - -1.4
2,392,347 + -0.6
2,392,348 - -3.7
2,392,348 - -0.1
2,392,348 - -0.6
2,392,394 + +0.0
2,392,434 + +0.3
2,392,434 + +0.7
2,392,434 + -2.2
2,392,435 - +1.4
2,392,435 - -0.4
2,392,448 - -1.1
2,392,452 + -3.2
2,392,452 + -2.5
2,392,452 + -0.6
2,392,452 + -2.7
2,392,452 + -3.4
2,392,453 - +0.1
2,392,455 + -0.3
2,392,881 - OLJFJH_11465 0.30 -1.7
2,392,954 + OLJFJH_11465 0.34 -0.6
2,392,958 + OLJFJH_11465 0.35 -0.1
2,392,959 - OLJFJH_11465 0.35 -0.6
2,392,959 - OLJFJH_11465 0.35 -0.1
2,392,959 - OLJFJH_11465 0.35 -1.9
2,392,959 - OLJFJH_11465 0.35 -0.6
2,392,959 - OLJFJH_11465 0.35 -0.8
2,392,959 - OLJFJH_11465 0.35 +0.9
2,393,048 + OLJFJH_11465 0.41 +0.2

Or see this region's nucleotide sequence