Strain Fitness in Erwinia amylovora T8 around OLJFJH_09625

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_09615 and OLJFJH_09620 overlap by 4 nucleotidesOLJFJH_09620 and OLJFJH_09625 are separated by 72 nucleotidesOLJFJH_09625 and OLJFJH_09635 are separated by 160 nucleotidesOLJFJH_09635 and OLJFJH_09640 are separated by 63 nucleotides OLJFJH_09615: OLJFJH_09615 - fructose-1-phosphate/6-phosphogluconate phosphatase, at 1,986,526 to 1,987,092 _09615 OLJFJH_09620: OLJFJH_09620 - DedA family protein, at 1,987,089 to 1,987,517 _09620 OLJFJH_09625: OLJFJH_09625 - glutamate--cysteine ligase, at 1,987,590 to 1,989,149 _09625 OLJFJH_09635: OLJFJH_09635 - S-ribosylhomocysteine lyase, at 1,989,310 to 1,989,825 _09635 OLJFJH_09640: OLJFJH_09640 - magnesium/cobalt efflux protein, at 1,989,889 to 1,991,175 _09640 Position (kb) 1987 1988 1989 1990Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1986.786 kb on - strand, within OLJFJH_09615at 1986.786 kb on - strand, within OLJFJH_09615at 1986.786 kb on - strand, within OLJFJH_09615at 1986.802 kb on - strand, within OLJFJH_09615at 1986.802 kb on - strand, within OLJFJH_09615at 1986.940 kb on - strand, within OLJFJH_09615at 1986.940 kb on - strand, within OLJFJH_09615at 1986.949 kb on - strand, within OLJFJH_09615at 1986.963 kb on + strand, within OLJFJH_09615at 1986.964 kb on - strand, within OLJFJH_09615at 1986.987 kb on - strand, within OLJFJH_09615at 1986.987 kb on - strand, within OLJFJH_09615at 1987.040 kb on + strandat 1987.107 kb on + strandat 1987.127 kb on + strandat 1987.127 kb on + strandat 1987.148 kb on - strand, within OLJFJH_09620at 1987.222 kb on + strand, within OLJFJH_09620at 1987.238 kb on + strand, within OLJFJH_09620at 1987.238 kb on + strand, within OLJFJH_09620at 1987.283 kb on - strand, within OLJFJH_09620at 1987.324 kb on + strand, within OLJFJH_09620at 1987.325 kb on - strand, within OLJFJH_09620at 1987.369 kb on + strand, within OLJFJH_09620at 1987.378 kb on + strand, within OLJFJH_09620at 1987.378 kb on + strand, within OLJFJH_09620at 1987.378 kb on + strand, within OLJFJH_09620at 1987.379 kb on - strand, within OLJFJH_09620at 1987.411 kb on + strand, within OLJFJH_09620at 1987.412 kb on - strand, within OLJFJH_09620at 1987.463 kb on - strand, within OLJFJH_09620at 1987.463 kb on - strand, within OLJFJH_09620at 1987.463 kb on - strand, within OLJFJH_09620at 1987.467 kb on + strand, within OLJFJH_09620at 1987.467 kb on + strand, within OLJFJH_09620at 1987.468 kb on - strand, within OLJFJH_09620at 1987.537 kb on - strandat 1987.543 kb on - strandat 1987.549 kb on - strandat 1987.560 kb on + strandat 1987.563 kb on + strandat 1987.604 kb on - strandat 1987.619 kb on - strandat 1987.619 kb on - strandat 1987.751 kb on + strand, within OLJFJH_09625at 1987.751 kb on + strand, within OLJFJH_09625at 1987.752 kb on - strand, within OLJFJH_09625at 1987.883 kb on + strand, within OLJFJH_09625at 1987.883 kb on + strand, within OLJFJH_09625at 1987.883 kb on + strand, within OLJFJH_09625at 1987.884 kb on - strand, within OLJFJH_09625at 1987.930 kb on + strand, within OLJFJH_09625at 1987.930 kb on + strand, within OLJFJH_09625at 1987.930 kb on + strand, within OLJFJH_09625at 1987.930 kb on + strand, within OLJFJH_09625at 1987.930 kb on + strand, within OLJFJH_09625at 1987.930 kb on + strand, within OLJFJH_09625at 1987.931 kb on - strand, within OLJFJH_09625at 1988.040 kb on + strand, within OLJFJH_09625at 1988.040 kb on + strand, within OLJFJH_09625at 1988.105 kb on + strand, within OLJFJH_09625at 1988.106 kb on - strand, within OLJFJH_09625at 1988.141 kb on - strand, within OLJFJH_09625at 1988.148 kb on + strand, within OLJFJH_09625at 1988.149 kb on - strand, within OLJFJH_09625at 1988.319 kb on - strand, within OLJFJH_09625at 1988.319 kb on - strand, within OLJFJH_09625at 1988.365 kb on - strand, within OLJFJH_09625at 1988.365 kb on - strand, within OLJFJH_09625at 1988.367 kb on - strand, within OLJFJH_09625at 1988.477 kb on - strand, within OLJFJH_09625at 1988.490 kb on + strand, within OLJFJH_09625at 1988.490 kb on + strand, within OLJFJH_09625at 1988.568 kb on + strand, within OLJFJH_09625at 1988.570 kb on + strand, within OLJFJH_09625at 1988.570 kb on + strand, within OLJFJH_09625at 1988.664 kb on - strand, within OLJFJH_09625at 1988.790 kb on + strand, within OLJFJH_09625at 1988.791 kb on - strand, within OLJFJH_09625at 1988.791 kb on - strand, within OLJFJH_09625at 1988.878 kb on - strand, within OLJFJH_09625at 1989.116 kb on + strandat 1989.134 kb on - strandat 1989.182 kb on + strandat 1989.381 kb on + strand, within OLJFJH_09635at 1989.381 kb on + strand, within OLJFJH_09635at 1989.381 kb on + strand, within OLJFJH_09635at 1989.381 kb on + strand, within OLJFJH_09635at 1989.382 kb on - strand, within OLJFJH_09635at 1989.499 kb on - strand, within OLJFJH_09635at 1989.540 kb on + strand, within OLJFJH_09635at 1989.541 kb on - strand, within OLJFJH_09635at 1989.571 kb on + strand, within OLJFJH_09635at 1989.700 kb on + strand, within OLJFJH_09635at 1989.700 kb on + strand, within OLJFJH_09635at 1989.719 kb on - strand, within OLJFJH_09635at 1989.744 kb on + strand, within OLJFJH_09635at 1989.820 kb on - strandat 1989.942 kb on + strandat 1989.970 kb on - strandat 1989.990 kb on + strandat 1989.990 kb on + strandat 1990.041 kb on + strand, within OLJFJH_09640at 1990.047 kb on + strand, within OLJFJH_09640at 1990.126 kb on - strand, within OLJFJH_09640

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
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1,986,786 - OLJFJH_09615 0.46 -1.1
1,986,786 - OLJFJH_09615 0.46 -0.1
1,986,786 - OLJFJH_09615 0.46 +0.0
1,986,802 - OLJFJH_09615 0.49 +0.8
1,986,802 - OLJFJH_09615 0.49 -0.8
1,986,940 - OLJFJH_09615 0.73 +0.6
1,986,940 - OLJFJH_09615 0.73 -0.6
1,986,949 - OLJFJH_09615 0.75 +0.3
1,986,963 + OLJFJH_09615 0.77 +0.7
1,986,964 - OLJFJH_09615 0.77 -1.1
1,986,987 - OLJFJH_09615 0.81 +0.6
1,986,987 - OLJFJH_09615 0.81 +0.3
1,987,040 + +1.1
1,987,107 + +1.4
1,987,127 + +1.0
1,987,127 + +1.9
1,987,148 - OLJFJH_09620 0.14 +1.1
1,987,222 + OLJFJH_09620 0.31 +0.4
1,987,238 + OLJFJH_09620 0.35 +1.8
1,987,238 + OLJFJH_09620 0.35 +0.5
1,987,283 - OLJFJH_09620 0.45 -1.1
1,987,324 + OLJFJH_09620 0.55 +0.1
1,987,325 - OLJFJH_09620 0.55 +0.9
1,987,369 + OLJFJH_09620 0.65 +0.1
1,987,378 + OLJFJH_09620 0.67 +1.7
1,987,378 + OLJFJH_09620 0.67 +1.0
1,987,378 + OLJFJH_09620 0.67 -0.6
1,987,379 - OLJFJH_09620 0.68 -0.2
1,987,411 + OLJFJH_09620 0.75 +0.4
1,987,412 - OLJFJH_09620 0.75 +0.6
1,987,463 - OLJFJH_09620 0.87 +1.2
1,987,463 - OLJFJH_09620 0.87 +1.3
1,987,463 - OLJFJH_09620 0.87 +0.1
1,987,467 + OLJFJH_09620 0.88 +0.4
1,987,467 + OLJFJH_09620 0.88 -1.1
1,987,468 - OLJFJH_09620 0.88 +0.3
1,987,537 - -0.2
1,987,543 - +0.8
1,987,549 - -1.2
1,987,560 + +1.3
1,987,563 + -1.4
1,987,604 - -0.3
1,987,619 - -1.3
1,987,619 - -2.4
1,987,751 + OLJFJH_09625 0.10 -0.5
1,987,751 + OLJFJH_09625 0.10 -2.2
1,987,752 - OLJFJH_09625 0.10 -2.1
1,987,883 + OLJFJH_09625 0.19 -1.2
1,987,883 + OLJFJH_09625 0.19 -0.1
1,987,883 + OLJFJH_09625 0.19 -1.1
1,987,884 - OLJFJH_09625 0.19 -1.1
1,987,930 + OLJFJH_09625 0.22 +0.5
1,987,930 + OLJFJH_09625 0.22 -2.1
1,987,930 + OLJFJH_09625 0.22 -0.6
1,987,930 + OLJFJH_09625 0.22 -1.8
1,987,930 + OLJFJH_09625 0.22 -2.8
1,987,930 + OLJFJH_09625 0.22 -1.0
1,987,931 - OLJFJH_09625 0.22 +0.1
1,988,040 + OLJFJH_09625 0.29 -0.1
1,988,040 + OLJFJH_09625 0.29 -1.4
1,988,105 + OLJFJH_09625 0.33 -3.2
1,988,106 - OLJFJH_09625 0.33 -0.0
1,988,141 - OLJFJH_09625 0.35 -1.4
1,988,148 + OLJFJH_09625 0.36 -0.3
1,988,149 - OLJFJH_09625 0.36 +1.2
1,988,319 - OLJFJH_09625 0.47 -1.0
1,988,319 - OLJFJH_09625 0.47 -3.1
1,988,365 - OLJFJH_09625 0.50 -3.4
1,988,365 - OLJFJH_09625 0.50 +0.2
1,988,367 - OLJFJH_09625 0.50 -0.1
1,988,477 - OLJFJH_09625 0.57 -0.7
1,988,490 + OLJFJH_09625 0.58 -1.7
1,988,490 + OLJFJH_09625 0.58 -1.2
1,988,568 + OLJFJH_09625 0.63 -0.4
1,988,570 + OLJFJH_09625 0.63 -1.9
1,988,570 + OLJFJH_09625 0.63 -1.1
1,988,664 - OLJFJH_09625 0.69 +1.0
1,988,790 + OLJFJH_09625 0.77 -2.3
1,988,791 - OLJFJH_09625 0.77 +0.0
1,988,791 - OLJFJH_09625 0.77 -2.1
1,988,878 - OLJFJH_09625 0.83 -2.2
1,989,116 + -0.1
1,989,134 - -3.6
1,989,182 + +1.6
1,989,381 + OLJFJH_09635 0.14 +0.1
1,989,381 + OLJFJH_09635 0.14 +0.1
1,989,381 + OLJFJH_09635 0.14 -0.2
1,989,381 + OLJFJH_09635 0.14 -0.8
1,989,382 - OLJFJH_09635 0.14 +0.2
1,989,499 - OLJFJH_09635 0.37 +0.9
1,989,540 + OLJFJH_09635 0.45 +3.2
1,989,541 - OLJFJH_09635 0.45 -1.0
1,989,571 + OLJFJH_09635 0.51 +0.7
1,989,700 + OLJFJH_09635 0.76 +0.3
1,989,700 + OLJFJH_09635 0.76 -0.4
1,989,719 - OLJFJH_09635 0.79 -0.6
1,989,744 + OLJFJH_09635 0.84 +0.8
1,989,820 - +0.8
1,989,942 + +0.4
1,989,970 - -0.8
1,989,990 + +0.4
1,989,990 + -0.5
1,990,041 + OLJFJH_09640 0.12 +0.2
1,990,047 + OLJFJH_09640 0.12 -0.8
1,990,126 - OLJFJH_09640 0.18 +3.0

Or see this region's nucleotide sequence