Strain Fitness in Erwinia amylovora T8 around OLJFJH_05615

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_05605 and OLJFJH_05610 are separated by 129 nucleotidesOLJFJH_05610 and OLJFJH_05615 overlap by 4 nucleotidesOLJFJH_05615 and OLJFJH_05620 are separated by 199 nucleotides OLJFJH_05605: OLJFJH_05605 - hypothetical protein, at 1,143,198 to 1,143,605 _05605 OLJFJH_05610: OLJFJH_05610 - hypothetical protein, at 1,143,735 to 1,144,190 _05610 OLJFJH_05615: OLJFJH_05615 - Conserved uncharacterized protein, at 1,144,187 to 1,144,504 _05615 OLJFJH_05620: OLJFJH_05620 - hypothetical protein, at 1,144,704 to 1,145,291 _05620 Position (kb) 1144 1145Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1143.360 kb on - strand, within OLJFJH_05605at 1143.360 kb on - strand, within OLJFJH_05605at 1143.400 kb on + strand, within OLJFJH_05605at 1143.470 kb on + strand, within OLJFJH_05605at 1143.594 kb on - strandat 1143.600 kb on - strandat 1143.613 kb on + strandat 1143.613 kb on + strandat 1143.651 kb on + strandat 1143.701 kb on - strandat 1143.746 kb on - strandat 1143.783 kb on - strand, within OLJFJH_05610at 1143.783 kb on - strand, within OLJFJH_05610at 1143.786 kb on - strand, within OLJFJH_05610at 1143.792 kb on - strand, within OLJFJH_05610at 1143.824 kb on - strand, within OLJFJH_05610at 1143.824 kb on - strand, within OLJFJH_05610at 1143.851 kb on - strand, within OLJFJH_05610at 1143.893 kb on + strand, within OLJFJH_05610at 1143.893 kb on + strand, within OLJFJH_05610at 1144.061 kb on - strand, within OLJFJH_05610at 1144.085 kb on - strand, within OLJFJH_05610at 1144.085 kb on - strand, within OLJFJH_05610at 1144.135 kb on - strand, within OLJFJH_05610at 1144.140 kb on - strand, within OLJFJH_05610at 1144.152 kb on + strandat 1144.152 kb on + strandat 1144.196 kb on + strandat 1144.197 kb on - strandat 1144.197 kb on - strandat 1144.199 kb on - strandat 1144.270 kb on + strand, within OLJFJH_05615at 1144.330 kb on - strand, within OLJFJH_05615at 1144.376 kb on - strand, within OLJFJH_05615at 1144.465 kb on + strand, within OLJFJH_05615at 1144.573 kb on - strandat 1144.575 kb on - strandat 1144.824 kb on + strand, within OLJFJH_05620at 1144.991 kb on - strand, within OLJFJH_05620at 1145.073 kb on + strand, within OLJFJH_05620at 1145.074 kb on - strand, within OLJFJH_05620at 1145.074 kb on - strand, within OLJFJH_05620at 1145.074 kb on - strand, within OLJFJH_05620at 1145.078 kb on - strand, within OLJFJH_05620at 1145.078 kb on - strand, within OLJFJH_05620at 1145.078 kb on - strand, within OLJFJH_05620at 1145.078 kb on - strand, within OLJFJH_05620at 1145.357 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
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1,143,360 - OLJFJH_05605 0.40 +0.6
1,143,360 - OLJFJH_05605 0.40 -0.3
1,143,400 + OLJFJH_05605 0.50 +0.2
1,143,470 + OLJFJH_05605 0.67 -1.5
1,143,594 - -0.8
1,143,600 - +0.4
1,143,613 + -0.4
1,143,613 + -0.4
1,143,651 + -1.1
1,143,701 - -0.2
1,143,746 - +3.0
1,143,783 - OLJFJH_05610 0.11 +0.3
1,143,783 - OLJFJH_05610 0.11 -0.3
1,143,786 - OLJFJH_05610 0.11 +0.7
1,143,792 - OLJFJH_05610 0.12 +0.8
1,143,824 - OLJFJH_05610 0.20 -0.1
1,143,824 - OLJFJH_05610 0.20 +0.1
1,143,851 - OLJFJH_05610 0.25 +0.0
1,143,893 + OLJFJH_05610 0.35 -0.5
1,143,893 + OLJFJH_05610 0.35 -0.7
1,144,061 - OLJFJH_05610 0.71 +0.4
1,144,085 - OLJFJH_05610 0.77 -0.4
1,144,085 - OLJFJH_05610 0.77 +1.0
1,144,135 - OLJFJH_05610 0.88 +0.7
1,144,140 - OLJFJH_05610 0.89 -0.6
1,144,152 + +0.8
1,144,152 + +0.5
1,144,196 + -3.8
1,144,197 - -1.8
1,144,197 - -5.1
1,144,199 - -2.6
1,144,270 + OLJFJH_05615 0.26 -2.4
1,144,330 - OLJFJH_05615 0.45 -1.1
1,144,376 - OLJFJH_05615 0.59 -3.3
1,144,465 + OLJFJH_05615 0.87 -2.8
1,144,573 - +0.5
1,144,575 - +0.2
1,144,824 + OLJFJH_05620 0.20 +0.1
1,144,991 - OLJFJH_05620 0.49 -0.6
1,145,073 + OLJFJH_05620 0.63 +0.2
1,145,074 - OLJFJH_05620 0.63 -1.9
1,145,074 - OLJFJH_05620 0.63 +0.3
1,145,074 - OLJFJH_05620 0.63 +0.2
1,145,078 - OLJFJH_05620 0.64 +1.2
1,145,078 - OLJFJH_05620 0.64 +0.5
1,145,078 - OLJFJH_05620 0.64 -2.6
1,145,078 - OLJFJH_05620 0.64 +0.4
1,145,357 + -1.2

Or see this region's nucleotide sequence