Strain Fitness in Erwinia amylovora T8 around OLJFJH_04925

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04920 and OLJFJH_04925 are separated by 547 nucleotidesOLJFJH_04925 and OLJFJH_04930 overlap by 11 nucleotides OLJFJH_04920: OLJFJH_04920 - hypothetical protein, at 974,408 to 974,647 _04920 OLJFJH_04925: OLJFJH_04925 - HNH endonuclease, at 975,195 to 976,046 _04925 OLJFJH_04930: OLJFJH_04930 - DNA adenine methylase, at 976,036 to 977,889 _04930 Position (kb) 975 976 977Strain fitness (log2 ratio) -3 -2 -1 0 1at 974.372 kb on + strandat 974.528 kb on + strand, within OLJFJH_04920at 974.529 kb on - strand, within OLJFJH_04920at 974.529 kb on - strand, within OLJFJH_04920at 974.529 kb on - strand, within OLJFJH_04920at 974.546 kb on - strand, within OLJFJH_04920at 974.610 kb on + strand, within OLJFJH_04920at 974.611 kb on - strand, within OLJFJH_04920at 974.652 kb on + strandat 974.666 kb on + strandat 974.724 kb on + strandat 974.834 kb on + strandat 974.920 kb on + strandat 975.429 kb on - strand, within OLJFJH_04925at 975.531 kb on + strand, within OLJFJH_04925at 975.868 kb on - strand, within OLJFJH_04925at 976.126 kb on - strandat 976.358 kb on + strand, within OLJFJH_04930at 976.521 kb on + strand, within OLJFJH_04930at 976.522 kb on - strand, within OLJFJH_04930at 976.545 kb on + strand, within OLJFJH_04930at 976.557 kb on + strand, within OLJFJH_04930at 976.566 kb on - strand, within OLJFJH_04930at 976.719 kb on + strand, within OLJFJH_04930at 976.868 kb on - strand, within OLJFJH_04930

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
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974,372 + -0.3
974,528 + OLJFJH_04920 0.50 +0.8
974,529 - OLJFJH_04920 0.50 +0.9
974,529 - OLJFJH_04920 0.50 +0.7
974,529 - OLJFJH_04920 0.50 -0.9
974,546 - OLJFJH_04920 0.57 -2.9
974,610 + OLJFJH_04920 0.84 +0.7
974,611 - OLJFJH_04920 0.85 +0.7
974,652 + -0.5
974,666 + -1.0
974,724 + -0.8
974,834 + +0.4
974,920 + +0.8
975,429 - OLJFJH_04925 0.27 -1.6
975,531 + OLJFJH_04925 0.39 -1.0
975,868 - OLJFJH_04925 0.79 +0.0
976,126 - -0.7
976,358 + OLJFJH_04930 0.17 -0.6
976,521 + OLJFJH_04930 0.26 +1.5
976,522 - OLJFJH_04930 0.26 +0.5
976,545 + OLJFJH_04930 0.27 +1.5
976,557 + OLJFJH_04930 0.28 -0.0
976,566 - OLJFJH_04930 0.29 -0.5
976,719 + OLJFJH_04930 0.37 +1.7
976,868 - OLJFJH_04930 0.45 +0.5

Or see this region's nucleotide sequence