Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_04155 and OLJFJH_04160 overlap by 4 nucleotides OLJFJH_04160 and OLJFJH_04165 are separated by 157 nucleotides OLJFJH_04165 and OLJFJH_04170 are separated by 128 nucleotides
OLJFJH_04155: OLJFJH_04155 - two-component system sensor histidine kinase EnvZ, at 792,155 to 793,504
_04155
OLJFJH_04160: OLJFJH_04160 - two-component system response regulator OmpR, at 793,501 to 794,352
_04160
OLJFJH_04165: OLJFJH_04165 - transcription elongation factor GreB, at 794,510 to 794,989
_04165
OLJFJH_04170: OLJFJH_04170 - RNA-binding transcriptional accessory protein, at 795,118 to 797,451
_04170
Position (kb) 793
794
795 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 792.882 kb on + strand, within OLJFJH_04155 at 793.237 kb on + strand, within OLJFJH_04155 at 793.238 kb on - strand, within OLJFJH_04155 at 793.238 kb on - strand, within OLJFJH_04155 at 793.238 kb on - strand, within OLJFJH_04155 at 793.239 kb on + strand, within OLJFJH_04155 at 793.240 kb on - strand, within OLJFJH_04155 at 793.254 kb on - strand, within OLJFJH_04155 at 793.263 kb on + strand, within OLJFJH_04155 at 793.462 kb on + strand at 793.463 kb on - strand at 793.477 kb on + strand at 793.557 kb on + strand at 793.559 kb on + strand at 793.641 kb on - strand, within OLJFJH_04160 at 793.702 kb on + strand, within OLJFJH_04160 at 793.797 kb on + strand, within OLJFJH_04160 at 793.797 kb on + strand, within OLJFJH_04160 at 793.916 kb on + strand, within OLJFJH_04160 at 793.916 kb on + strand, within OLJFJH_04160 at 793.916 kb on + strand, within OLJFJH_04160 at 793.917 kb on - strand, within OLJFJH_04160 at 793.917 kb on - strand, within OLJFJH_04160 at 793.917 kb on - strand, within OLJFJH_04160 at 793.980 kb on + strand, within OLJFJH_04160 at 794.299 kb on + strand at 794.299 kb on + strand at 794.300 kb on - strand at 794.300 kb on - strand at 794.301 kb on + strand at 794.302 kb on - strand at 794.331 kb on + strand at 794.343 kb on + strand at 794.344 kb on - strand at 794.432 kb on + strand at 794.432 kb on + strand at 794.652 kb on - strand, within OLJFJH_04165 at 794.657 kb on + strand, within OLJFJH_04165 at 794.788 kb on - strand, within OLJFJH_04165 at 794.858 kb on + strand, within OLJFJH_04165 at 794.858 kb on + strand, within OLJFJH_04165 at 794.858 kb on + strand, within OLJFJH_04165 at 794.859 kb on - strand, within OLJFJH_04165 at 794.859 kb on - strand, within OLJFJH_04165 at 794.859 kb on - strand, within OLJFJH_04165 at 794.860 kb on + strand, within OLJFJH_04165 at 794.860 kb on + strand, within OLJFJH_04165 at 794.860 kb on + strand, within OLJFJH_04165 at 794.860 kb on + strand, within OLJFJH_04165 at 794.860 kb on + strand, within OLJFJH_04165 at 794.861 kb on - strand, within OLJFJH_04165 at 794.861 kb on - strand, within OLJFJH_04165 at 794.861 kb on - strand, within OLJFJH_04165 at 794.861 kb on - strand, within OLJFJH_04165 at 794.861 kb on - strand, within OLJFJH_04165 at 794.861 kb on - strand, within OLJFJH_04165 at 794.861 kb on - strand, within OLJFJH_04165 at 794.861 kb on - strand, within OLJFJH_04165 at 794.861 kb on - strand, within OLJFJH_04165 at 794.861 kb on - strand, within OLJFJH_04165 at 794.955 kb on - strand at 794.973 kb on - strand at 794.973 kb on - strand at 794.973 kb on - strand at 795.109 kb on + strand at 795.110 kb on - strand at 795.110 kb on - strand at 795.114 kb on - strand at 795.114 kb on - strand at 795.261 kb on - strand at 795.301 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8 remove 792,882 + OLJFJH_04155 0.54 +0.2 793,237 + OLJFJH_04155 0.80 -0.9 793,238 - OLJFJH_04155 0.80 -1.0 793,238 - OLJFJH_04155 0.80 +0.4 793,238 - OLJFJH_04155 0.80 -1.7 793,239 + OLJFJH_04155 0.80 -2.1 793,240 - OLJFJH_04155 0.80 -0.3 793,254 - OLJFJH_04155 0.81 -0.1 793,263 + OLJFJH_04155 0.82 -4.0 793,462 + -1.2 793,463 - -3.0 793,477 + -2.1 793,557 + -0.3 793,559 + -0.6 793,641 - OLJFJH_04160 0.16 -0.6 793,702 + OLJFJH_04160 0.24 -2.6 793,797 + OLJFJH_04160 0.35 -0.3 793,797 + OLJFJH_04160 0.35 -1.5 793,916 + OLJFJH_04160 0.49 -1.7 793,916 + OLJFJH_04160 0.49 +0.2 793,916 + OLJFJH_04160 0.49 -2.2 793,917 - OLJFJH_04160 0.49 -0.3 793,917 - OLJFJH_04160 0.49 -3.0 793,917 - OLJFJH_04160 0.49 -2.4 793,980 + OLJFJH_04160 0.56 -0.6 794,299 + -1.0 794,299 + -0.3 794,300 - -0.4 794,300 - -0.3 794,301 + -0.4 794,302 - -1.1 794,331 + +0.4 794,343 + -0.1 794,344 - -1.8 794,432 + -0.8 794,432 + -2.0 794,652 - OLJFJH_04165 0.30 +2.3 794,657 + OLJFJH_04165 0.31 +0.0 794,788 - OLJFJH_04165 0.58 -0.3 794,858 + OLJFJH_04165 0.72 -0.5 794,858 + OLJFJH_04165 0.72 -0.2 794,858 + OLJFJH_04165 0.72 +1.9 794,859 - OLJFJH_04165 0.73 -1.2 794,859 - OLJFJH_04165 0.73 -0.4 794,859 - OLJFJH_04165 0.73 +3.1 794,860 + OLJFJH_04165 0.73 +0.2 794,860 + OLJFJH_04165 0.73 +1.2 794,860 + OLJFJH_04165 0.73 +0.5 794,860 + OLJFJH_04165 0.73 +0.4 794,860 + OLJFJH_04165 0.73 -0.3 794,861 - OLJFJH_04165 0.73 -0.4 794,861 - OLJFJH_04165 0.73 -0.1 794,861 - OLJFJH_04165 0.73 -0.7 794,861 - OLJFJH_04165 0.73 -0.2 794,861 - OLJFJH_04165 0.73 +1.2 794,861 - OLJFJH_04165 0.73 +0.3 794,861 - OLJFJH_04165 0.73 +2.0 794,861 - OLJFJH_04165 0.73 +0.2 794,861 - OLJFJH_04165 0.73 +0.2 794,861 - OLJFJH_04165 0.73 -2.3 794,955 - +1.5 794,973 - -1.3 794,973 - +0.9 794,973 - +1.1 795,109 + +0.5 795,110 - +0.3 795,110 - -0.2 795,114 - +0.9 795,114 - +0.3 795,261 - -0.3 795,301 + +1.4
Or see this region's nucleotide sequence