Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_03560 and OLJFJH_03565 are separated by 474 nucleotides
OLJFJH_03560: OLJFJH_03560 - conjugal transfer protein TraF, at 686,353 to 687,585
_03560
OLJFJH_03565: OLJFJH_03565 - zinc uptake transcriptional repressor Zur, at 688,060 to 688,569
_03565
Position (kb) 686
687
688 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 685.373 kb on + strand at 685.386 kb on + strand at 685.387 kb on - strand at 685.392 kb on - strand at 685.392 kb on - strand at 685.392 kb on - strand at 685.491 kb on + strand at 685.492 kb on - strand at 685.547 kb on + strand at 685.561 kb on + strand at 685.561 kb on + strand at 685.561 kb on + strand at 685.562 kb on - strand at 685.565 kb on + strand at 685.565 kb on + strand at 685.565 kb on + strand at 685.566 kb on - strand at 685.610 kb on + strand at 685.611 kb on - strand at 685.611 kb on - strand at 685.617 kb on + strand at 685.617 kb on + strand at 685.618 kb on - strand at 685.618 kb on - strand at 685.709 kb on + strand at 685.709 kb on + strand at 685.710 kb on - strand at 685.711 kb on + strand at 685.711 kb on + strand at 685.711 kb on + strand at 685.712 kb on - strand at 685.712 kb on - strand at 685.712 kb on - strand at 685.750 kb on - strand at 685.769 kb on + strand at 685.769 kb on + strand at 685.769 kb on + strand at 685.770 kb on - strand at 685.770 kb on - strand at 685.770 kb on - strand at 685.770 kb on - strand at 685.812 kb on + strand at 685.821 kb on + strand at 685.822 kb on - strand at 685.825 kb on + strand at 685.826 kb on - strand at 685.923 kb on - strand at 685.923 kb on - strand at 685.923 kb on - strand at 685.923 kb on - strand at 685.923 kb on - strand at 685.923 kb on - strand at 685.940 kb on + strand at 685.940 kb on + strand at 685.941 kb on - strand at 685.945 kb on + strand at 685.945 kb on + strand at 685.945 kb on + strand at 685.945 kb on + strand at 685.945 kb on + strand at 685.945 kb on + strand at 685.946 kb on - strand at 685.946 kb on - strand at 685.954 kb on + strand at 685.974 kb on + strand at 686.000 kb on + strand at 686.042 kb on + strand at 686.042 kb on + strand at 686.074 kb on - strand at 686.111 kb on - strand at 686.311 kb on + strand at 686.354 kb on + strand at 686.436 kb on + strand at 686.436 kb on + strand at 686.436 kb on + strand at 686.436 kb on + strand at 686.437 kb on - strand at 686.438 kb on + strand at 686.439 kb on - strand at 686.439 kb on - strand at 686.447 kb on - strand at 686.447 kb on - strand at 686.472 kb on + strand at 686.589 kb on + strand, within OLJFJH_03560 at 686.675 kb on + strand, within OLJFJH_03560 at 686.704 kb on - strand, within OLJFJH_03560 at 686.712 kb on + strand, within OLJFJH_03560 at 686.817 kb on - strand, within OLJFJH_03560 at 686.820 kb on + strand, within OLJFJH_03560 at 686.820 kb on + strand, within OLJFJH_03560 at 686.821 kb on - strand, within OLJFJH_03560 at 686.845 kb on - strand, within OLJFJH_03560 at 686.845 kb on - strand, within OLJFJH_03560 at 686.847 kb on - strand, within OLJFJH_03560 at 686.872 kb on - strand, within OLJFJH_03560 at 686.872 kb on - strand, within OLJFJH_03560 at 686.873 kb on + strand, within OLJFJH_03560 at 686.873 kb on + strand, within OLJFJH_03560 at 686.873 kb on + strand, within OLJFJH_03560 at 686.873 kb on + strand, within OLJFJH_03560 at 686.874 kb on - strand, within OLJFJH_03560 at 686.874 kb on - strand, within OLJFJH_03560 at 686.874 kb on - strand, within OLJFJH_03560 at 686.891 kb on - strand, within OLJFJH_03560 at 687.076 kb on - strand, within OLJFJH_03560 at 687.108 kb on + strand, within OLJFJH_03560 at 687.108 kb on + strand, within OLJFJH_03560 at 687.108 kb on + strand, within OLJFJH_03560 at 687.282 kb on - strand, within OLJFJH_03560 at 687.366 kb on + strand, within OLJFJH_03560 at 687.366 kb on + strand, within OLJFJH_03560 at 687.367 kb on - strand, within OLJFJH_03560 at 687.434 kb on + strand, within OLJFJH_03560 at 687.434 kb on + strand, within OLJFJH_03560 at 687.489 kb on - strand at 687.489 kb on - strand at 687.662 kb on + strand at 687.663 kb on - strand at 687.718 kb on - strand at 687.739 kb on + strand at 687.739 kb on + strand at 687.775 kb on - strand at 687.903 kb on - strand at 687.939 kb on - strand at 688.055 kb on + strand at 688.056 kb on - strand at 688.203 kb on - strand, within OLJFJH_03565 at 688.278 kb on + strand, within OLJFJH_03565 at 688.302 kb on + strand, within OLJFJH_03565 at 688.306 kb on + strand, within OLJFJH_03565 at 688.306 kb on + strand, within OLJFJH_03565 at 688.306 kb on + strand, within OLJFJH_03565 at 688.307 kb on - strand, within OLJFJH_03565 at 688.307 kb on - strand, within OLJFJH_03565 at 688.307 kb on - strand, within OLJFJH_03565 at 688.341 kb on + strand, within OLJFJH_03565 at 688.341 kb on + strand, within OLJFJH_03565 at 688.342 kb on - strand, within OLJFJH_03565 at 688.358 kb on + strand, within OLJFJH_03565 at 688.410 kb on + strand, within OLJFJH_03565 at 688.411 kb on - strand, within OLJFJH_03565 at 688.411 kb on - strand, within OLJFJH_03565 at 688.412 kb on + strand, within OLJFJH_03565 at 688.412 kb on + strand, within OLJFJH_03565 at 688.412 kb on + strand, within OLJFJH_03565 at 688.412 kb on + strand, within OLJFJH_03565 at 688.499 kb on + strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.500 kb on - strand, within OLJFJH_03565 at 688.510 kb on - strand, within OLJFJH_03565
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8 remove 685,373 + -2.0 685,386 + +0.5 685,387 - +0.3 685,392 - +4.1 685,392 - +0.9 685,392 - -0.4 685,491 + +0.4 685,492 - -0.4 685,547 + -1.2 685,561 + +1.5 685,561 + +1.4 685,561 + -0.4 685,562 - -0.7 685,565 + +1.2 685,565 + +1.8 685,565 + -1.8 685,566 - -1.5 685,610 + +0.2 685,611 - -0.8 685,611 - +1.6 685,617 + +0.9 685,617 + -0.8 685,618 - +1.3 685,618 - -0.8 685,709 + +0.4 685,709 + +4.5 685,710 - -0.0 685,711 + -0.1 685,711 + +0.8 685,711 + +1.2 685,712 - -0.1 685,712 - +0.4 685,712 - -0.8 685,750 - +0.6 685,769 + +0.1 685,769 + -0.8 685,769 + +1.1 685,770 - +0.3 685,770 - +0.9 685,770 - -1.8 685,770 - -0.4 685,812 + -0.3 685,821 + -0.6 685,822 - -0.4 685,825 + +1.5 685,826 - +0.9 685,923 - +1.0 685,923 - -0.5 685,923 - -0.0 685,923 - -0.5 685,923 - -1.2 685,923 - -0.9 685,940 + +0.2 685,940 + -0.0 685,941 - -0.6 685,945 + +0.0 685,945 + +0.1 685,945 + -0.3 685,945 + -2.6 685,945 + +0.1 685,945 + -2.3 685,946 - +0.1 685,946 - -1.7 685,954 + -0.2 685,974 + +0.7 686,000 + +0.5 686,042 + +0.3 686,042 + -1.4 686,074 - +0.8 686,111 - +0.5 686,311 + +0.6 686,354 + -0.8 686,436 + +0.4 686,436 + -0.1 686,436 + -1.7 686,436 + -1.4 686,437 - -0.4 686,438 + +0.5 686,439 - +1.4 686,439 - +2.8 686,447 - -0.3 686,447 - -0.9 686,472 + -0.2 686,589 + OLJFJH_03560 0.19 -0.8 686,675 + OLJFJH_03560 0.26 +1.1 686,704 - OLJFJH_03560 0.28 +0.3 686,712 + OLJFJH_03560 0.29 -1.4 686,817 - OLJFJH_03560 0.38 +0.7 686,820 + OLJFJH_03560 0.38 -0.7 686,820 + OLJFJH_03560 0.38 -0.2 686,821 - OLJFJH_03560 0.38 -0.3 686,845 - OLJFJH_03560 0.40 -0.8 686,845 - OLJFJH_03560 0.40 -0.7 686,847 - OLJFJH_03560 0.40 +0.2 686,872 - OLJFJH_03560 0.42 -0.9 686,872 - OLJFJH_03560 0.42 -0.9 686,873 + OLJFJH_03560 0.42 -0.2 686,873 + OLJFJH_03560 0.42 +1.2 686,873 + OLJFJH_03560 0.42 -0.2 686,873 + OLJFJH_03560 0.42 -2.3 686,874 - OLJFJH_03560 0.42 -0.1 686,874 - OLJFJH_03560 0.42 -0.0 686,874 - OLJFJH_03560 0.42 -1.1 686,891 - OLJFJH_03560 0.44 -0.7 687,076 - OLJFJH_03560 0.59 -1.2 687,108 + OLJFJH_03560 0.61 -0.3 687,108 + OLJFJH_03560 0.61 -0.2 687,108 + OLJFJH_03560 0.61 -0.1 687,282 - OLJFJH_03560 0.75 -1.1 687,366 + OLJFJH_03560 0.82 -1.7 687,366 + OLJFJH_03560 0.82 +0.1 687,367 - OLJFJH_03560 0.82 +0.7 687,434 + OLJFJH_03560 0.88 +0.0 687,434 + OLJFJH_03560 0.88 +0.3 687,489 - -0.2 687,489 - +1.1 687,662 + +0.2 687,663 - -0.2 687,718 - -0.5 687,739 + +0.1 687,739 + -0.1 687,775 - -0.1 687,903 - -0.5 687,939 - +0.2 688,055 + -0.9 688,056 - -0.8 688,203 - OLJFJH_03565 0.28 +0.6 688,278 + OLJFJH_03565 0.43 +1.4 688,302 + OLJFJH_03565 0.47 +0.3 688,306 + OLJFJH_03565 0.48 -0.7 688,306 + OLJFJH_03565 0.48 -2.3 688,306 + OLJFJH_03565 0.48 -1.3 688,307 - OLJFJH_03565 0.48 +0.2 688,307 - OLJFJH_03565 0.48 -0.8 688,307 - OLJFJH_03565 0.48 -2.2 688,341 + OLJFJH_03565 0.55 +1.4 688,341 + OLJFJH_03565 0.55 -0.2 688,342 - OLJFJH_03565 0.55 -0.7 688,358 + OLJFJH_03565 0.58 -2.9 688,410 + OLJFJH_03565 0.69 -0.5 688,411 - OLJFJH_03565 0.69 +1.6 688,411 - OLJFJH_03565 0.69 -0.7 688,412 + OLJFJH_03565 0.69 +0.1 688,412 + OLJFJH_03565 0.69 -0.5 688,412 + OLJFJH_03565 0.69 +0.2 688,412 + OLJFJH_03565 0.69 -0.6 688,499 + OLJFJH_03565 0.86 -0.6 688,500 - OLJFJH_03565 0.86 -0.8 688,500 - OLJFJH_03565 0.86 +1.4 688,500 - OLJFJH_03565 0.86 -0.2 688,500 - OLJFJH_03565 0.86 +0.4 688,500 - OLJFJH_03565 0.86 +0.5 688,500 - OLJFJH_03565 0.86 +1.4 688,500 - OLJFJH_03565 0.86 +0.1 688,510 - OLJFJH_03565 0.88 +0.2
Or see this region's nucleotide sequence