Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_03505 and OLJFJH_03510 are separated by 185 nucleotides OLJFJH_03510 and OLJFJH_03515 are separated by 394 nucleotides OLJFJH_03515 and OLJFJH_03520 are separated by 54 nucleotides
OLJFJH_03505: OLJFJH_03505 - hypothetical protein, at 678,436 to 678,633
_03505
OLJFJH_03510: OLJFJH_03510 - phage holin lambda family, at 678,819 to 679,136
_03510
OLJFJH_03515: OLJFJH_03515 - HicB-like domain-containing protein, at 679,531 to 679,944
_03515
OLJFJH_03520: OLJFJH_03520 - DNA modification methylase, at 679,999 to 680,538
_03520
Position (kb) 679
680 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 678.576 kb on + strand, within OLJFJH_03505 at 678.576 kb on + strand, within OLJFJH_03505 at 678.576 kb on + strand, within OLJFJH_03505 at 678.576 kb on + strand, within OLJFJH_03505 at 678.577 kb on - strand, within OLJFJH_03505 at 678.577 kb on - strand, within OLJFJH_03505 at 678.577 kb on - strand, within OLJFJH_03505 at 678.641 kb on + strand at 678.641 kb on + strand at 678.641 kb on + strand at 678.661 kb on + strand at 678.662 kb on - strand at 678.662 kb on - strand at 678.704 kb on + strand at 678.704 kb on + strand at 678.705 kb on - strand at 678.705 kb on - strand at 678.707 kb on + strand at 678.708 kb on - strand at 678.766 kb on + strand at 678.766 kb on + strand at 678.767 kb on - strand at 678.767 kb on - strand at 678.767 kb on - strand at 678.767 kb on - strand at 678.770 kb on + strand at 678.776 kb on + strand at 678.798 kb on - strand at 678.798 kb on - strand at 678.798 kb on - strand at 678.899 kb on + strand, within OLJFJH_03510 at 678.899 kb on + strand, within OLJFJH_03510 at 678.900 kb on - strand, within OLJFJH_03510 at 678.900 kb on - strand, within OLJFJH_03510 at 678.904 kb on - strand, within OLJFJH_03510 at 679.010 kb on - strand, within OLJFJH_03510 at 679.021 kb on - strand, within OLJFJH_03510 at 679.082 kb on + strand, within OLJFJH_03510 at 679.083 kb on - strand, within OLJFJH_03510 at 679.096 kb on + strand, within OLJFJH_03510 at 679.097 kb on - strand, within OLJFJH_03510 at 679.130 kb on + strand at 679.130 kb on + strand at 679.131 kb on - strand at 679.131 kb on - strand at 679.131 kb on - strand at 679.136 kb on + strand at 679.258 kb on + strand at 679.260 kb on + strand at 679.260 kb on + strand at 679.260 kb on + strand at 679.261 kb on - strand at 679.264 kb on + strand at 679.397 kb on + strand at 679.398 kb on - strand at 679.398 kb on - strand at 679.426 kb on - strand at 679.775 kb on + strand, within OLJFJH_03515 at 679.845 kb on - strand, within OLJFJH_03515 at 679.883 kb on - strand, within OLJFJH_03515 at 679.929 kb on - strand at 679.995 kb on + strand at 680.054 kb on - strand, within OLJFJH_03520 at 680.154 kb on + strand, within OLJFJH_03520 at 680.154 kb on + strand, within OLJFJH_03520 at 680.154 kb on + strand, within OLJFJH_03520 at 680.154 kb on + strand, within OLJFJH_03520 at 680.155 kb on - strand, within OLJFJH_03520 at 680.155 kb on - strand, within OLJFJH_03520 at 680.310 kb on + strand, within OLJFJH_03520 at 680.310 kb on + strand, within OLJFJH_03520 at 680.311 kb on - strand, within OLJFJH_03520 at 680.315 kb on - strand, within OLJFJH_03520 at 680.366 kb on + strand, within OLJFJH_03520 at 680.398 kb on - strand, within OLJFJH_03520 at 680.561 kb on + strand at 680.561 kb on + strand at 680.562 kb on - strand at 680.592 kb on + strand at 680.679 kb on - strand at 680.679 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8 remove 678,576 + OLJFJH_03505 0.71 -0.7 678,576 + OLJFJH_03505 0.71 -0.2 678,576 + OLJFJH_03505 0.71 +0.2 678,576 + OLJFJH_03505 0.71 +2.3 678,577 - OLJFJH_03505 0.71 +1.5 678,577 - OLJFJH_03505 0.71 +1.1 678,577 - OLJFJH_03505 0.71 -0.3 678,641 + +0.3 678,641 + +0.4 678,641 + -0.5 678,661 + -0.6 678,662 - -1.7 678,662 - -1.5 678,704 + -0.0 678,704 + -0.1 678,705 - -0.4 678,705 - +3.2 678,707 + -0.2 678,708 - +1.3 678,766 + +0.6 678,766 + +0.0 678,767 - +0.5 678,767 - -0.2 678,767 - +0.1 678,767 - +1.2 678,770 + +1.3 678,776 + +0.8 678,798 - +0.8 678,798 - -0.2 678,798 - -1.7 678,899 + OLJFJH_03510 0.25 -0.9 678,899 + OLJFJH_03510 0.25 -0.3 678,900 - OLJFJH_03510 0.25 -0.8 678,900 - OLJFJH_03510 0.25 +1.0 678,904 - OLJFJH_03510 0.27 +1.1 679,010 - OLJFJH_03510 0.60 +1.7 679,021 - OLJFJH_03510 0.64 +0.2 679,082 + OLJFJH_03510 0.83 -0.1 679,083 - OLJFJH_03510 0.83 -0.1 679,096 + OLJFJH_03510 0.87 -0.2 679,097 - OLJFJH_03510 0.87 -0.6 679,130 + -0.0 679,130 + +0.1 679,131 - +0.6 679,131 - -1.6 679,131 - -0.7 679,136 + -0.1 679,258 + +0.3 679,260 + +0.0 679,260 + +0.5 679,260 + +0.7 679,261 - -2.1 679,264 + +1.5 679,397 + +0.0 679,398 - -1.2 679,398 - +1.0 679,426 - -0.8 679,775 + OLJFJH_03515 0.59 -1.4 679,845 - OLJFJH_03515 0.76 -2.5 679,883 - OLJFJH_03515 0.85 -0.7 679,929 - -1.3 679,995 + +0.0 680,054 - OLJFJH_03520 0.10 +1.7 680,154 + OLJFJH_03520 0.29 +0.5 680,154 + OLJFJH_03520 0.29 -1.2 680,154 + OLJFJH_03520 0.29 -1.6 680,154 + OLJFJH_03520 0.29 -0.3 680,155 - OLJFJH_03520 0.29 -0.5 680,155 - OLJFJH_03520 0.29 -2.2 680,310 + OLJFJH_03520 0.58 +0.5 680,310 + OLJFJH_03520 0.58 +0.2 680,311 - OLJFJH_03520 0.58 -1.6 680,315 - OLJFJH_03520 0.59 -0.5 680,366 + OLJFJH_03520 0.68 +2.2 680,398 - OLJFJH_03520 0.74 -2.3 680,561 + -0.4 680,561 + +2.6 680,562 - +0.1 680,592 + -0.0 680,679 - -1.1 680,679 - +2.9
Or see this region's nucleotide sequence