Strain Fitness in Erwinia amylovora T8 around OLJFJH_03485

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03480 and OLJFJH_03485 are separated by 627 nucleotidesOLJFJH_03485 and OLJFJH_03490 overlap by 35 nucleotidesOLJFJH_03490 and OLJFJH_03495 are separated by 0 nucleotides OLJFJH_03480: OLJFJH_03480 - Integrase/recombinase includes phage integrase, at 673,337 to 674,299 _03480 OLJFJH_03485: OLJFJH_03485 - translocase, at 674,927 to 675,319 _03485 OLJFJH_03490: OLJFJH_03490 - glycosyltransferase, at 675,285 to 676,208 _03490 OLJFJH_03495: OLJFJH_03495 - Glucosyl transferase GtrII, at 676,209 to 677,651 _03495 Position (kb) 674 675 676Strain fitness (log2 ratio) -2 -1 0 1 2at 673.970 kb on - strand, within OLJFJH_03480at 673.989 kb on + strand, within OLJFJH_03480at 673.989 kb on + strand, within OLJFJH_03480at 673.990 kb on - strand, within OLJFJH_03480at 674.180 kb on + strand, within OLJFJH_03480at 674.298 kb on - strandat 674.298 kb on - strandat 674.342 kb on + strandat 674.343 kb on - strandat 674.353 kb on + strandat 674.364 kb on - strandat 674.364 kb on - strandat 674.409 kb on + strandat 674.410 kb on - strandat 674.476 kb on + strandat 674.476 kb on + strandat 674.620 kb on - strandat 674.716 kb on - strandat 674.723 kb on - strandat 674.825 kb on + strandat 674.971 kb on + strand, within OLJFJH_03485at 674.971 kb on + strand, within OLJFJH_03485at 675.001 kb on - strand, within OLJFJH_03485at 675.129 kb on + strand, within OLJFJH_03485at 675.178 kb on - strand, within OLJFJH_03485at 675.240 kb on + strand, within OLJFJH_03485at 675.250 kb on + strand, within OLJFJH_03485at 675.255 kb on - strand, within OLJFJH_03485at 675.525 kb on - strand, within OLJFJH_03490at 675.528 kb on + strand, within OLJFJH_03490at 675.605 kb on + strand, within OLJFJH_03490at 675.710 kb on + strand, within OLJFJH_03490at 675.804 kb on - strand, within OLJFJH_03490at 675.855 kb on - strand, within OLJFJH_03490at 675.857 kb on - strand, within OLJFJH_03490at 675.975 kb on + strand, within OLJFJH_03490at 675.975 kb on + strand, within OLJFJH_03490at 676.073 kb on + strand, within OLJFJH_03490at 676.138 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
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673,970 - OLJFJH_03480 0.66 -0.5
673,989 + OLJFJH_03480 0.68 +0.0
673,989 + OLJFJH_03480 0.68 -0.8
673,990 - OLJFJH_03480 0.68 -0.7
674,180 + OLJFJH_03480 0.88 -0.5
674,298 - +0.3
674,298 - +2.1
674,342 + +0.9
674,343 - -0.3
674,353 + +2.0
674,364 - -0.5
674,364 - +0.3
674,409 + +1.1
674,410 - +1.4
674,476 + -0.3
674,476 + -0.8
674,620 - +2.1
674,716 - -1.1
674,723 - +1.2
674,825 + +0.8
674,971 + OLJFJH_03485 0.11 -1.9
674,971 + OLJFJH_03485 0.11 -0.9
675,001 - OLJFJH_03485 0.19 -0.2
675,129 + OLJFJH_03485 0.51 -0.9
675,178 - OLJFJH_03485 0.64 -2.0
675,240 + OLJFJH_03485 0.80 -1.4
675,250 + OLJFJH_03485 0.82 -0.3
675,255 - OLJFJH_03485 0.83 -0.7
675,525 - OLJFJH_03490 0.26 -2.2
675,528 + OLJFJH_03490 0.26 +1.3
675,605 + OLJFJH_03490 0.35 +0.4
675,710 + OLJFJH_03490 0.46 -2.2
675,804 - OLJFJH_03490 0.56 +0.3
675,855 - OLJFJH_03490 0.62 +1.5
675,857 - OLJFJH_03490 0.62 -2.0
675,975 + OLJFJH_03490 0.75 +0.6
675,975 + OLJFJH_03490 0.75 -0.9
676,073 + OLJFJH_03490 0.85 -0.8
676,138 - -1.1

Or see this region's nucleotide sequence