Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_03480 and OLJFJH_03485 are separated by 627 nucleotides OLJFJH_03485 and OLJFJH_03490 overlap by 35 nucleotides OLJFJH_03490 and OLJFJH_03495 are separated by 0 nucleotides
OLJFJH_03480: OLJFJH_03480 - Integrase/recombinase includes phage integrase, at 673,337 to 674,299
_03480
OLJFJH_03485: OLJFJH_03485 - translocase, at 674,927 to 675,319
_03485
OLJFJH_03490: OLJFJH_03490 - glycosyltransferase, at 675,285 to 676,208
_03490
OLJFJH_03495: OLJFJH_03495 - Glucosyl transferase GtrII, at 676,209 to 677,651
_03495
Position (kb) 674
675
676 Strain fitness (log2 ratio) -2
-1
0
1
2 at 673.970 kb on - strand, within OLJFJH_03480 at 673.989 kb on + strand, within OLJFJH_03480 at 673.989 kb on + strand, within OLJFJH_03480 at 673.990 kb on - strand, within OLJFJH_03480 at 674.180 kb on + strand, within OLJFJH_03480 at 674.298 kb on - strand at 674.298 kb on - strand at 674.342 kb on + strand at 674.343 kb on - strand at 674.353 kb on + strand at 674.364 kb on - strand at 674.364 kb on - strand at 674.409 kb on + strand at 674.410 kb on - strand at 674.476 kb on + strand at 674.476 kb on + strand at 674.620 kb on - strand at 674.716 kb on - strand at 674.723 kb on - strand at 674.825 kb on + strand at 674.971 kb on + strand, within OLJFJH_03485 at 674.971 kb on + strand, within OLJFJH_03485 at 675.001 kb on - strand, within OLJFJH_03485 at 675.129 kb on + strand, within OLJFJH_03485 at 675.178 kb on - strand, within OLJFJH_03485 at 675.240 kb on + strand, within OLJFJH_03485 at 675.250 kb on + strand, within OLJFJH_03485 at 675.255 kb on - strand, within OLJFJH_03485 at 675.525 kb on - strand, within OLJFJH_03490 at 675.528 kb on + strand, within OLJFJH_03490 at 675.605 kb on + strand, within OLJFJH_03490 at 675.710 kb on + strand, within OLJFJH_03490 at 675.804 kb on - strand, within OLJFJH_03490 at 675.855 kb on - strand, within OLJFJH_03490 at 675.857 kb on - strand, within OLJFJH_03490 at 675.975 kb on + strand, within OLJFJH_03490 at 675.975 kb on + strand, within OLJFJH_03490 at 676.073 kb on + strand, within OLJFJH_03490 at 676.138 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8 remove 673,970 - OLJFJH_03480 0.66 -0.5 673,989 + OLJFJH_03480 0.68 +0.0 673,989 + OLJFJH_03480 0.68 -0.8 673,990 - OLJFJH_03480 0.68 -0.7 674,180 + OLJFJH_03480 0.88 -0.5 674,298 - +0.3 674,298 - +2.1 674,342 + +0.9 674,343 - -0.3 674,353 + +2.0 674,364 - -0.5 674,364 - +0.3 674,409 + +1.1 674,410 - +1.4 674,476 + -0.3 674,476 + -0.8 674,620 - +2.1 674,716 - -1.1 674,723 - +1.2 674,825 + +0.8 674,971 + OLJFJH_03485 0.11 -1.9 674,971 + OLJFJH_03485 0.11 -0.9 675,001 - OLJFJH_03485 0.19 -0.2 675,129 + OLJFJH_03485 0.51 -0.9 675,178 - OLJFJH_03485 0.64 -2.0 675,240 + OLJFJH_03485 0.80 -1.4 675,250 + OLJFJH_03485 0.82 -0.3 675,255 - OLJFJH_03485 0.83 -0.7 675,525 - OLJFJH_03490 0.26 -2.2 675,528 + OLJFJH_03490 0.26 +1.3 675,605 + OLJFJH_03490 0.35 +0.4 675,710 + OLJFJH_03490 0.46 -2.2 675,804 - OLJFJH_03490 0.56 +0.3 675,855 - OLJFJH_03490 0.62 +1.5 675,857 - OLJFJH_03490 0.62 -2.0 675,975 + OLJFJH_03490 0.75 +0.6 675,975 + OLJFJH_03490 0.75 -0.9 676,073 + OLJFJH_03490 0.85 -0.8 676,138 - -1.1
Or see this region's nucleotide sequence