Strain Fitness in Erwinia amylovora T8 around OLJFJH_03450

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03440 and OLJFJH_03445 are separated by 113 nucleotidesOLJFJH_03445 and OLJFJH_03450 are separated by 114 nucleotidesOLJFJH_03450 and OLJFJH_03455 are separated by 23 nucleotidesOLJFJH_03455 and OLJFJH_03460 are separated by 297 nucleotides OLJFJH_03440: OLJFJH_03440 - Uncharacterized protein conserved in bacteria, at 666,435 to 666,641 _03440 OLJFJH_03445: OLJFJH_03445 - Uncharacterised protein family UPF0047, at 666,755 to 667,174 _03445 OLJFJH_03450: OLJFJH_03450 - aromatic amino acid aminotransferase, at 667,289 to 668,482 _03450 OLJFJH_03455: OLJFJH_03455 - hypothetical protein, at 668,506 to 668,787 _03455 OLJFJH_03460: OLJFJH_03460 - replicative DNA helicase, at 669,085 to 670,500 _03460 Position (kb) 667 668 669Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 666.329 kb on + strandat 666.473 kb on - strand, within OLJFJH_03440at 666.473 kb on - strand, within OLJFJH_03440at 666.475 kb on + strand, within OLJFJH_03440at 666.573 kb on + strand, within OLJFJH_03440at 666.573 kb on + strand, within OLJFJH_03440at 666.574 kb on - strand, within OLJFJH_03440at 666.574 kb on - strand, within OLJFJH_03440at 666.603 kb on + strand, within OLJFJH_03440at 666.604 kb on - strand, within OLJFJH_03440at 666.604 kb on - strand, within OLJFJH_03440at 666.610 kb on - strand, within OLJFJH_03440at 666.717 kb on - strandat 666.728 kb on - strandat 666.736 kb on - strandat 666.744 kb on + strandat 666.745 kb on - strandat 666.745 kb on - strandat 666.745 kb on - strandat 666.745 kb on - strandat 666.745 kb on - strandat 666.745 kb on - strandat 666.750 kb on + strandat 666.750 kb on + strandat 666.824 kb on + strand, within OLJFJH_03445at 666.826 kb on + strand, within OLJFJH_03445at 666.826 kb on + strand, within OLJFJH_03445at 666.826 kb on + strand, within OLJFJH_03445at 666.826 kb on + strand, within OLJFJH_03445at 666.826 kb on + strand, within OLJFJH_03445at 666.827 kb on - strand, within OLJFJH_03445at 666.838 kb on + strand, within OLJFJH_03445at 666.839 kb on - strand, within OLJFJH_03445at 666.945 kb on + strand, within OLJFJH_03445at 666.946 kb on - strand, within OLJFJH_03445at 667.042 kb on + strand, within OLJFJH_03445at 667.042 kb on + strand, within OLJFJH_03445at 667.042 kb on + strand, within OLJFJH_03445at 667.043 kb on - strand, within OLJFJH_03445at 667.043 kb on - strand, within OLJFJH_03445at 667.043 kb on - strand, within OLJFJH_03445at 667.043 kb on - strand, within OLJFJH_03445at 667.043 kb on - strand, within OLJFJH_03445at 667.062 kb on - strand, within OLJFJH_03445at 667.062 kb on - strand, within OLJFJH_03445at 667.192 kb on + strandat 667.193 kb on - strandat 667.193 kb on - strandat 667.204 kb on + strandat 667.204 kb on + strandat 667.204 kb on + strandat 667.205 kb on - strandat 667.205 kb on - strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.291 kb on - strandat 667.291 kb on - strandat 667.291 kb on - strandat 667.291 kb on - strandat 667.291 kb on - strandat 667.355 kb on + strandat 667.355 kb on + strandat 667.355 kb on + strandat 667.356 kb on - strandat 667.356 kb on - strandat 667.377 kb on + strandat 667.420 kb on + strand, within OLJFJH_03450at 667.441 kb on + strand, within OLJFJH_03450at 667.442 kb on - strand, within OLJFJH_03450at 667.442 kb on - strand, within OLJFJH_03450at 667.529 kb on - strand, within OLJFJH_03450at 667.529 kb on - strand, within OLJFJH_03450at 667.534 kb on + strand, within OLJFJH_03450at 667.582 kb on + strand, within OLJFJH_03450at 667.614 kb on + strand, within OLJFJH_03450at 667.632 kb on + strand, within OLJFJH_03450at 667.633 kb on - strand, within OLJFJH_03450at 667.637 kb on - strand, within OLJFJH_03450at 667.756 kb on + strand, within OLJFJH_03450at 667.756 kb on + strand, within OLJFJH_03450at 667.760 kb on + strand, within OLJFJH_03450at 667.804 kb on - strand, within OLJFJH_03450at 667.804 kb on - strand, within OLJFJH_03450at 668.130 kb on + strand, within OLJFJH_03450at 668.137 kb on + strand, within OLJFJH_03450at 668.374 kb on - strandat 668.377 kb on - strandat 668.377 kb on - strandat 668.499 kb on - strandat 668.507 kb on + strandat 668.507 kb on + strandat 668.507 kb on + strandat 668.507 kb on + strandat 668.542 kb on + strand, within OLJFJH_03455at 668.543 kb on - strand, within OLJFJH_03455at 668.803 kb on + strandat 668.814 kb on - strandat 668.814 kb on - strandat 668.981 kb on - strandat 668.986 kb on + strandat 669.038 kb on + strandat 669.038 kb on + strandat 669.038 kb on + strandat 669.039 kb on - strandat 669.039 kb on - strandat 669.039 kb on - strandat 669.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
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666,329 + -0.2
666,473 - OLJFJH_03440 0.18 +0.4
666,473 - OLJFJH_03440 0.18 -1.4
666,475 + OLJFJH_03440 0.19 -0.8
666,573 + OLJFJH_03440 0.67 +0.9
666,573 + OLJFJH_03440 0.67 -0.4
666,574 - OLJFJH_03440 0.67 -0.2
666,574 - OLJFJH_03440 0.67 +0.1
666,603 + OLJFJH_03440 0.81 -1.1
666,604 - OLJFJH_03440 0.82 -0.1
666,604 - OLJFJH_03440 0.82 +0.6
666,610 - OLJFJH_03440 0.85 -0.1
666,717 - -0.3
666,728 - -0.5
666,736 - +1.0
666,744 + +0.8
666,745 - -0.6
666,745 - +0.1
666,745 - -0.0
666,745 - +1.4
666,745 - +0.3
666,745 - -0.4
666,750 + -0.7
666,750 + -0.1
666,824 + OLJFJH_03445 0.16 +2.2
666,826 + OLJFJH_03445 0.17 -0.2
666,826 + OLJFJH_03445 0.17 +0.5
666,826 + OLJFJH_03445 0.17 +0.4
666,826 + OLJFJH_03445 0.17 -0.6
666,826 + OLJFJH_03445 0.17 -0.4
666,827 - OLJFJH_03445 0.17 +0.4
666,838 + OLJFJH_03445 0.20 -0.5
666,839 - OLJFJH_03445 0.20 +0.5
666,945 + OLJFJH_03445 0.45 +0.4
666,946 - OLJFJH_03445 0.45 -1.3
667,042 + OLJFJH_03445 0.68 +0.1
667,042 + OLJFJH_03445 0.68 +0.4
667,042 + OLJFJH_03445 0.68 -2.6
667,043 - OLJFJH_03445 0.69 +0.7
667,043 - OLJFJH_03445 0.69 +0.5
667,043 - OLJFJH_03445 0.69 +3.4
667,043 - OLJFJH_03445 0.69 -1.6
667,043 - OLJFJH_03445 0.69 +0.2
667,062 - OLJFJH_03445 0.73 -1.3
667,062 - OLJFJH_03445 0.73 +1.0
667,192 + +0.1
667,193 - -0.9
667,193 - -1.2
667,204 + -1.8
667,204 + -1.9
667,204 + -0.4
667,205 - +0.4
667,205 - -0.2
667,290 + +3.0
667,290 + -0.7
667,290 + -0.4
667,290 + -0.4
667,290 + +0.6
667,290 + +1.5
667,290 + -0.8
667,290 + -0.5
667,290 + -3.0
667,290 + -1.4
667,291 - -0.7
667,291 - +0.4
667,291 - -0.9
667,291 - +0.1
667,291 - -1.0
667,355 + -0.2
667,355 + -1.5
667,355 + -0.5
667,356 - -2.0
667,356 - -2.0
667,377 + +0.2
667,420 + OLJFJH_03450 0.11 -0.8
667,441 + OLJFJH_03450 0.13 -1.8
667,442 - OLJFJH_03450 0.13 -0.8
667,442 - OLJFJH_03450 0.13 -2.0
667,529 - OLJFJH_03450 0.20 +3.6
667,529 - OLJFJH_03450 0.20 -0.6
667,534 + OLJFJH_03450 0.21 -1.3
667,582 + OLJFJH_03450 0.25 -2.6
667,614 + OLJFJH_03450 0.27 -0.1
667,632 + OLJFJH_03450 0.29 -0.1
667,633 - OLJFJH_03450 0.29 -0.4
667,637 - OLJFJH_03450 0.29 +0.2
667,756 + OLJFJH_03450 0.39 -1.8
667,756 + OLJFJH_03450 0.39 -1.3
667,760 + OLJFJH_03450 0.39 +1.6
667,804 - OLJFJH_03450 0.43 -1.1
667,804 - OLJFJH_03450 0.43 -1.3
668,130 + OLJFJH_03450 0.70 -1.5
668,137 + OLJFJH_03450 0.71 -0.6
668,374 - -0.4
668,377 - -0.1
668,377 - +3.1
668,499 - -0.6
668,507 + -0.4
668,507 + +0.6
668,507 + -0.6
668,507 + +0.1
668,542 + OLJFJH_03455 0.13 -2.0
668,543 - OLJFJH_03455 0.13 +0.1
668,803 + +1.3
668,814 - +1.8
668,814 - +0.8
668,981 - +0.2
668,986 + -0.7
669,038 + +3.0
669,038 + -0.2
669,038 + +0.5
669,039 - +0.2
669,039 - -0.1
669,039 - -1.2
669,114 - +1.4

Or see this region's nucleotide sequence