Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_02355 and OLJFJH_02360 are separated by 161 nucleotides OLJFJH_02360 and OLJFJH_02365 are separated by 99 nucleotides OLJFJH_02365 and OLJFJH_02370 are separated by 172 nucleotides
OLJFJH_02355: OLJFJH_02355 - metalloprotease PmbA, at 415,302 to 416,642
_02355
OLJFJH_02360: OLJFJH_02360 - ribosome-associated protein, at 416,804 to 417,346
_02360
OLJFJH_02365: OLJFJH_02365 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase, at 417,446 to 418,798
_02365
OLJFJH_02370: OLJFJH_02370 - class 1 fructose-bisphosphatase, at 418,971 to 419,969
_02370
Position (kb) 417
418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 416.609 kb on + strand at 416.610 kb on - strand at 416.610 kb on - strand at 416.610 kb on - strand at 416.635 kb on - strand at 416.653 kb on + strand at 416.654 kb on - strand at 416.654 kb on - strand at 416.655 kb on + strand at 416.655 kb on + strand at 416.655 kb on + strand at 416.655 kb on + strand at 416.656 kb on - strand at 416.656 kb on - strand at 416.656 kb on - strand at 416.656 kb on - strand at 416.684 kb on + strand at 416.714 kb on + strand at 416.731 kb on - strand at 416.779 kb on + strand at 417.514 kb on + strand at 417.514 kb on + strand at 417.514 kb on + strand at 417.515 kb on - strand at 417.515 kb on - strand at 417.556 kb on + strand at 417.556 kb on + strand at 417.557 kb on - strand at 417.709 kb on + strand, within OLJFJH_02365 at 417.740 kb on - strand, within OLJFJH_02365 at 417.755 kb on + strand, within OLJFJH_02365 at 418.049 kb on - strand, within OLJFJH_02365 at 418.218 kb on + strand, within OLJFJH_02365 at 418.218 kb on + strand, within OLJFJH_02365 at 418.218 kb on + strand, within OLJFJH_02365 at 418.219 kb on - strand, within OLJFJH_02365 at 418.328 kb on + strand, within OLJFJH_02365 at 418.329 kb on - strand, within OLJFJH_02365 at 418.329 kb on - strand, within OLJFJH_02365 at 418.331 kb on + strand, within OLJFJH_02365 at 418.515 kb on - strand, within OLJFJH_02365 at 418.543 kb on + strand, within OLJFJH_02365 at 418.787 kb on - strand at 418.798 kb on + strand at 418.798 kb on + strand at 418.828 kb on + strand at 418.829 kb on - strand at 418.834 kb on - strand at 418.881 kb on + strand at 418.914 kb on + strand at 418.914 kb on + strand at 418.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8 remove 416,609 + +0.5 416,610 - -1.3 416,610 - -1.2 416,610 - -0.5 416,635 - -0.0 416,653 + -0.3 416,654 - +0.9 416,654 - +3.4 416,655 + -0.4 416,655 + +0.3 416,655 + -0.8 416,655 + -1.9 416,656 - -2.9 416,656 - +0.7 416,656 - -0.4 416,656 - -0.4 416,684 + -0.6 416,714 + -2.3 416,731 - -0.7 416,779 + -2.0 417,514 + -0.5 417,514 + -0.9 417,514 + -2.0 417,515 - -0.4 417,515 - -0.6 417,556 + -1.7 417,556 + -0.6 417,557 - -1.3 417,709 + OLJFJH_02365 0.19 -0.6 417,740 - OLJFJH_02365 0.22 +0.6 417,755 + OLJFJH_02365 0.23 -2.1 418,049 - OLJFJH_02365 0.45 -1.3 418,218 + OLJFJH_02365 0.57 -1.7 418,218 + OLJFJH_02365 0.57 -0.3 418,218 + OLJFJH_02365 0.57 -1.9 418,219 - OLJFJH_02365 0.57 -3.2 418,328 + OLJFJH_02365 0.65 -0.4 418,329 - OLJFJH_02365 0.65 +0.1 418,329 - OLJFJH_02365 0.65 -1.2 418,331 + OLJFJH_02365 0.65 -1.7 418,515 - OLJFJH_02365 0.79 +0.2 418,543 + OLJFJH_02365 0.81 -2.5 418,787 - -2.0 418,798 + -0.1 418,798 + -2.0 418,828 + +4.1 418,829 - -0.6 418,834 - -2.1 418,881 + -1.2 418,914 + +2.3 418,914 + +0.9 418,914 + -0.0
Or see this region's nucleotide sequence