Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01840 and OLJFJH_01845 are separated by 137 nucleotides OLJFJH_01845 and OLJFJH_01850 overlap by 16 nucleotides OLJFJH_01850 and OLJFJH_01855 are separated by 78 nucleotides OLJFJH_01855 and OLJFJH_01860 are separated by 104 nucleotides OLJFJH_01860 and OLJFJH_01865 are separated by 68 nucleotides
OLJFJH_01840: OLJFJH_01840 - type VI secretion protein, at 325,873 to 326,280
_01840
OLJFJH_01845: OLJFJH_01845 - type VI secretion protein, at 326,418 to 326,786
_01845
OLJFJH_01850: OLJFJH_01850 - Putative cytoplasmic protein, at 326,771 to 327,250
_01850
OLJFJH_01855: OLJFJH_01855 - type VI secretion system tube protein Hcp, at 327,329 to 327,811
_01855
OLJFJH_01860: OLJFJH_01860 - hypothetical protein, at 327,916 to 328,020
_01860
OLJFJH_01865: OLJFJH_01865 - type VI secretion system contractile sheath large subunit, at 328,089 to 329,588
_01865
Position (kb) 326
327
328 Strain fitness (log2 ratio) -2
-1
0
1
2 at 325.828 kb on - strand at 326.167 kb on - strand, within OLJFJH_01840 at 326.293 kb on - strand at 326.328 kb on + strand at 326.363 kb on + strand at 326.709 kb on - strand, within OLJFJH_01845 at 326.787 kb on - strand at 326.974 kb on + strand, within OLJFJH_01850 at 327.003 kb on - strand, within OLJFJH_01850 at 327.442 kb on - strand, within OLJFJH_01855 at 327.515 kb on - strand, within OLJFJH_01855 at 327.517 kb on + strand, within OLJFJH_01855 at 327.517 kb on + strand, within OLJFJH_01855 at 327.518 kb on - strand, within OLJFJH_01855 at 327.550 kb on + strand, within OLJFJH_01855 at 327.566 kb on + strand, within OLJFJH_01855 at 327.567 kb on - strand, within OLJFJH_01855 at 327.576 kb on - strand, within OLJFJH_01855 at 327.576 kb on - strand, within OLJFJH_01855 at 327.576 kb on - strand, within OLJFJH_01855 at 327.623 kb on - strand, within OLJFJH_01855 at 327.694 kb on + strand, within OLJFJH_01855 at 327.763 kb on + strand at 327.795 kb on + strand at 327.796 kb on - strand at 327.796 kb on - strand at 327.800 kb on - strand at 327.819 kb on + strand at 327.820 kb on - strand at 327.829 kb on - strand at 327.833 kb on - strand at 327.881 kb on + strand at 327.899 kb on + strand at 327.922 kb on - strand at 327.933 kb on - strand, within OLJFJH_01860 at 327.937 kb on - strand, within OLJFJH_01860 at 328.060 kb on - strand at 328.070 kb on + strand at 328.071 kb on - strand at 328.075 kb on - strand at 328.162 kb on + strand at 328.192 kb on + strand at 328.192 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8 remove 325,828 - -0.6 326,167 - OLJFJH_01840 0.72 +0.9 326,293 - -0.0 326,328 + +1.3 326,363 + +0.3 326,709 - OLJFJH_01845 0.79 -1.3 326,787 - -0.3 326,974 + OLJFJH_01850 0.42 -1.2 327,003 - OLJFJH_01850 0.48 -0.7 327,442 - OLJFJH_01855 0.23 +1.8 327,515 - OLJFJH_01855 0.39 +0.8 327,517 + OLJFJH_01855 0.39 -1.6 327,517 + OLJFJH_01855 0.39 +0.5 327,518 - OLJFJH_01855 0.39 -1.1 327,550 + OLJFJH_01855 0.46 -1.5 327,566 + OLJFJH_01855 0.49 -1.4 327,567 - OLJFJH_01855 0.49 -0.8 327,576 - OLJFJH_01855 0.51 +0.7 327,576 - OLJFJH_01855 0.51 -2.5 327,576 - OLJFJH_01855 0.51 +1.2 327,623 - OLJFJH_01855 0.61 -0.5 327,694 + OLJFJH_01855 0.76 +2.6 327,763 + -2.4 327,795 + -1.8 327,796 - -0.1 327,796 - +1.9 327,800 - -0.3 327,819 + +1.2 327,820 - -0.9 327,829 - -1.6 327,833 - -0.3 327,881 + -1.5 327,899 + +0.2 327,922 - +0.4 327,933 - OLJFJH_01860 0.16 +0.9 327,937 - OLJFJH_01860 0.20 +0.4 328,060 - -0.8 328,070 + -2.2 328,071 - +1.0 328,075 - +0.4 328,162 + -0.2 328,192 + +1.5 328,192 + -0.7
Or see this region's nucleotide sequence