Strain Fitness in Erwinia amylovora T8 around OLJFJH_01490

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01485 and OLJFJH_01490 are separated by 3 nucleotidesOLJFJH_01490 and OLJFJH_01495 are separated by 2 nucleotides OLJFJH_01485: OLJFJH_01485 - threonine synthase, at 242,484 to 243,770 _01485 OLJFJH_01490: OLJFJH_01490 - homoserine kinase, at 243,774 to 244,703 _01490 OLJFJH_01495: OLJFJH_01495 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 244,706 to 247,168 _01495 Position (kb) 243 244 245Strain fitness (log2 ratio) -3 -2 -1 0 1at 242.846 kb on + strand, within OLJFJH_01485at 242.846 kb on + strand, within OLJFJH_01485at 242.847 kb on - strand, within OLJFJH_01485at 242.847 kb on - strand, within OLJFJH_01485at 242.960 kb on + strand, within OLJFJH_01485at 243.091 kb on + strand, within OLJFJH_01485at 243.091 kb on + strand, within OLJFJH_01485at 243.092 kb on - strand, within OLJFJH_01485at 243.092 kb on - strand, within OLJFJH_01485at 243.095 kb on - strand, within OLJFJH_01485at 243.125 kb on + strand, within OLJFJH_01485at 243.143 kb on + strand, within OLJFJH_01485at 243.243 kb on - strand, within OLJFJH_01485at 243.412 kb on + strand, within OLJFJH_01485at 243.432 kb on - strand, within OLJFJH_01485at 243.432 kb on - strand, within OLJFJH_01485at 243.602 kb on + strand, within OLJFJH_01485at 243.609 kb on - strand, within OLJFJH_01485at 243.638 kb on + strand, within OLJFJH_01485at 243.732 kb on + strandat 243.733 kb on - strandat 243.752 kb on + strandat 243.759 kb on - strandat 243.759 kb on - strandat 243.760 kb on + strandat 243.760 kb on + strandat 243.761 kb on - strandat 243.771 kb on - strandat 243.786 kb on - strandat 243.804 kb on + strandat 243.816 kb on - strandat 243.870 kb on - strand, within OLJFJH_01490at 243.893 kb on + strand, within OLJFJH_01490at 244.017 kb on + strand, within OLJFJH_01490at 244.017 kb on + strand, within OLJFJH_01490at 244.017 kb on + strand, within OLJFJH_01490at 244.017 kb on + strand, within OLJFJH_01490at 244.018 kb on - strand, within OLJFJH_01490at 244.018 kb on - strand, within OLJFJH_01490at 244.058 kb on + strand, within OLJFJH_01490at 244.059 kb on - strand, within OLJFJH_01490at 244.104 kb on - strand, within OLJFJH_01490at 244.106 kb on + strand, within OLJFJH_01490at 244.106 kb on + strand, within OLJFJH_01490at 244.107 kb on - strand, within OLJFJH_01490at 244.326 kb on + strand, within OLJFJH_01490at 244.330 kb on - strand, within OLJFJH_01490at 244.351 kb on - strand, within OLJFJH_01490at 244.508 kb on - strand, within OLJFJH_01490at 244.707 kb on + strandat 244.732 kb on + strandat 244.732 kb on + strandat 244.732 kb on + strandat 244.732 kb on + strandat 244.736 kb on + strandat 244.751 kb on + strandat 244.751 kb on + strandat 244.827 kb on + strandat 244.827 kb on + strandat 244.827 kb on + strandat 244.827 kb on + strandat 244.827 kb on + strandat 244.828 kb on - strandat 245.042 kb on - strand, within OLJFJH_01495at 245.072 kb on + strand, within OLJFJH_01495at 245.073 kb on - strand, within OLJFJH_01495at 245.075 kb on - strand, within OLJFJH_01495at 245.081 kb on + strand, within OLJFJH_01495at 245.082 kb on - strand, within OLJFJH_01495at 245.355 kb on + strand, within OLJFJH_01495at 245.406 kb on + strand, within OLJFJH_01495at 245.406 kb on + strand, within OLJFJH_01495at 245.406 kb on + strand, within OLJFJH_01495at 245.407 kb on - strand, within OLJFJH_01495at 245.407 kb on - strand, within OLJFJH_01495at 245.413 kb on - strand, within OLJFJH_01495at 245.413 kb on - strand, within OLJFJH_01495at 245.413 kb on - strand, within OLJFJH_01495at 245.423 kb on - strand, within OLJFJH_01495at 245.423 kb on - strand, within OLJFJH_01495at 245.506 kb on + strand, within OLJFJH_01495at 245.506 kb on + strand, within OLJFJH_01495at 245.507 kb on - strand, within OLJFJH_01495at 245.538 kb on + strand, within OLJFJH_01495at 245.539 kb on - strand, within OLJFJH_01495at 245.539 kb on - strand, within OLJFJH_01495at 245.635 kb on + strand, within OLJFJH_01495

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
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242,846 + OLJFJH_01485 0.28 -2.4
242,846 + OLJFJH_01485 0.28 -0.0
242,847 - OLJFJH_01485 0.28 -2.8
242,847 - OLJFJH_01485 0.28 -2.7
242,960 + OLJFJH_01485 0.37 -1.4
243,091 + OLJFJH_01485 0.47 -2.0
243,091 + OLJFJH_01485 0.47 -1.7
243,092 - OLJFJH_01485 0.47 -2.5
243,092 - OLJFJH_01485 0.47 -2.2
243,095 - OLJFJH_01485 0.47 -0.9
243,125 + OLJFJH_01485 0.50 -0.2
243,143 + OLJFJH_01485 0.51 +0.9
243,243 - OLJFJH_01485 0.59 -0.9
243,412 + OLJFJH_01485 0.72 -1.7
243,432 - OLJFJH_01485 0.74 -2.2
243,432 - OLJFJH_01485 0.74 +0.5
243,602 + OLJFJH_01485 0.87 -2.0
243,609 - OLJFJH_01485 0.87 -1.2
243,638 + OLJFJH_01485 0.90 -1.0
243,732 + -1.6
243,733 - +0.5
243,752 + -0.3
243,759 - -1.8
243,759 - +0.2
243,760 + -0.3
243,760 + -1.1
243,761 - -2.6
243,771 - -0.6
243,786 - +0.1
243,804 + -0.6
243,816 - -1.1
243,870 - OLJFJH_01490 0.10 -0.6
243,893 + OLJFJH_01490 0.13 -0.7
244,017 + OLJFJH_01490 0.26 -0.8
244,017 + OLJFJH_01490 0.26 -2.2
244,017 + OLJFJH_01490 0.26 -0.8
244,017 + OLJFJH_01490 0.26 -0.5
244,018 - OLJFJH_01490 0.26 -0.6
244,018 - OLJFJH_01490 0.26 -2.9
244,058 + OLJFJH_01490 0.31 -1.5
244,059 - OLJFJH_01490 0.31 -1.3
244,104 - OLJFJH_01490 0.35 +0.2
244,106 + OLJFJH_01490 0.36 -1.5
244,106 + OLJFJH_01490 0.36 -0.6
244,107 - OLJFJH_01490 0.36 -1.5
244,326 + OLJFJH_01490 0.59 -1.9
244,330 - OLJFJH_01490 0.60 -0.5
244,351 - OLJFJH_01490 0.62 -0.8
244,508 - OLJFJH_01490 0.79 -1.3
244,707 + +0.0
244,732 + -2.3
244,732 + -0.9
244,732 + -0.9
244,732 + -1.5
244,736 + -1.5
244,751 + -0.6
244,751 + -1.9
244,827 + -0.2
244,827 + -3.1
244,827 + +1.4
244,827 + -1.4
244,827 + +1.5
244,828 - -0.7
245,042 - OLJFJH_01495 0.14 -1.2
245,072 + OLJFJH_01495 0.15 -1.2
245,073 - OLJFJH_01495 0.15 -0.6
245,075 - OLJFJH_01495 0.15 -1.7
245,081 + OLJFJH_01495 0.15 -3.7
245,082 - OLJFJH_01495 0.15 -1.4
245,355 + OLJFJH_01495 0.26 -0.4
245,406 + OLJFJH_01495 0.28 -0.7
245,406 + OLJFJH_01495 0.28 -1.2
245,406 + OLJFJH_01495 0.28 -0.8
245,407 - OLJFJH_01495 0.28 -0.1
245,407 - OLJFJH_01495 0.28 -0.8
245,413 - OLJFJH_01495 0.29 -0.6
245,413 - OLJFJH_01495 0.29 -0.8
245,413 - OLJFJH_01495 0.29 +0.1
245,423 - OLJFJH_01495 0.29 -1.1
245,423 - OLJFJH_01495 0.29 -1.1
245,506 + OLJFJH_01495 0.32 -0.9
245,506 + OLJFJH_01495 0.32 +0.2
245,507 - OLJFJH_01495 0.33 +0.4
245,538 + OLJFJH_01495 0.34 -0.9
245,539 - OLJFJH_01495 0.34 -1.2
245,539 - OLJFJH_01495 0.34 +0.3
245,635 + OLJFJH_01495 0.38 -1.1

Or see this region's nucleotide sequence