Strain Fitness in Erwinia amylovora T8 around OLJFJH_01485

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01480 and OLJFJH_01485 are separated by 63 nucleotidesOLJFJH_01485 and OLJFJH_01490 are separated by 3 nucleotidesOLJFJH_01490 and OLJFJH_01495 are separated by 2 nucleotides OLJFJH_01480: OLJFJH_01480 - peroxide stress protein YaaA, at 241,644 to 242,420 _01480 OLJFJH_01485: OLJFJH_01485 - threonine synthase, at 242,484 to 243,770 _01485 OLJFJH_01490: OLJFJH_01490 - homoserine kinase, at 243,774 to 244,703 _01490 OLJFJH_01495: OLJFJH_01495 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 244,706 to 247,168 _01495 Position (kb) 242 243 244Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 241.502 kb on + strandat 241.503 kb on - strandat 241.503 kb on - strandat 241.558 kb on + strandat 241.796 kb on + strand, within OLJFJH_01480at 241.797 kb on - strand, within OLJFJH_01480at 241.905 kb on + strand, within OLJFJH_01480at 241.905 kb on + strand, within OLJFJH_01480at 241.905 kb on + strand, within OLJFJH_01480at 241.905 kb on + strand, within OLJFJH_01480at 241.906 kb on - strand, within OLJFJH_01480at 241.970 kb on + strand, within OLJFJH_01480at 242.042 kb on + strand, within OLJFJH_01480at 242.042 kb on + strand, within OLJFJH_01480at 242.042 kb on + strand, within OLJFJH_01480at 242.043 kb on - strand, within OLJFJH_01480at 242.262 kb on + strand, within OLJFJH_01480at 242.268 kb on - strand, within OLJFJH_01480at 242.295 kb on + strand, within OLJFJH_01480at 242.295 kb on + strand, within OLJFJH_01480at 242.296 kb on - strand, within OLJFJH_01480at 242.438 kb on - strandat 242.485 kb on + strandat 242.485 kb on + strandat 242.486 kb on - strandat 242.673 kb on + strand, within OLJFJH_01485at 242.846 kb on + strand, within OLJFJH_01485at 242.846 kb on + strand, within OLJFJH_01485at 242.847 kb on - strand, within OLJFJH_01485at 242.847 kb on - strand, within OLJFJH_01485at 242.960 kb on + strand, within OLJFJH_01485at 243.091 kb on + strand, within OLJFJH_01485at 243.091 kb on + strand, within OLJFJH_01485at 243.092 kb on - strand, within OLJFJH_01485at 243.092 kb on - strand, within OLJFJH_01485at 243.095 kb on - strand, within OLJFJH_01485at 243.125 kb on + strand, within OLJFJH_01485at 243.143 kb on + strand, within OLJFJH_01485at 243.243 kb on - strand, within OLJFJH_01485at 243.412 kb on + strand, within OLJFJH_01485at 243.432 kb on - strand, within OLJFJH_01485at 243.432 kb on - strand, within OLJFJH_01485at 243.602 kb on + strand, within OLJFJH_01485at 243.609 kb on - strand, within OLJFJH_01485at 243.638 kb on + strand, within OLJFJH_01485at 243.732 kb on + strandat 243.733 kb on - strandat 243.752 kb on + strandat 243.759 kb on - strandat 243.759 kb on - strandat 243.760 kb on + strandat 243.760 kb on + strandat 243.761 kb on - strandat 243.771 kb on - strandat 243.786 kb on - strandat 243.804 kb on + strandat 243.816 kb on - strandat 243.870 kb on - strand, within OLJFJH_01490at 243.893 kb on + strand, within OLJFJH_01490at 244.017 kb on + strand, within OLJFJH_01490at 244.017 kb on + strand, within OLJFJH_01490at 244.017 kb on + strand, within OLJFJH_01490at 244.017 kb on + strand, within OLJFJH_01490at 244.018 kb on - strand, within OLJFJH_01490at 244.018 kb on - strand, within OLJFJH_01490at 244.058 kb on + strand, within OLJFJH_01490at 244.059 kb on - strand, within OLJFJH_01490at 244.104 kb on - strand, within OLJFJH_01490at 244.106 kb on + strand, within OLJFJH_01490at 244.106 kb on + strand, within OLJFJH_01490at 244.107 kb on - strand, within OLJFJH_01490at 244.326 kb on + strand, within OLJFJH_01490at 244.330 kb on - strand, within OLJFJH_01490at 244.351 kb on - strand, within OLJFJH_01490at 244.508 kb on - strand, within OLJFJH_01490at 244.707 kb on + strandat 244.732 kb on + strandat 244.732 kb on + strandat 244.732 kb on + strandat 244.732 kb on + strandat 244.736 kb on + strandat 244.751 kb on + strandat 244.751 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
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241,502 + -0.0
241,503 - +1.5
241,503 - +0.6
241,558 + -0.7
241,796 + OLJFJH_01480 0.20 -1.8
241,797 - OLJFJH_01480 0.20 -1.4
241,905 + OLJFJH_01480 0.34 +0.2
241,905 + OLJFJH_01480 0.34 -0.8
241,905 + OLJFJH_01480 0.34 -0.5
241,905 + OLJFJH_01480 0.34 -0.7
241,906 - OLJFJH_01480 0.34 +2.6
241,970 + OLJFJH_01480 0.42 +1.2
242,042 + OLJFJH_01480 0.51 +0.2
242,042 + OLJFJH_01480 0.51 +0.7
242,042 + OLJFJH_01480 0.51 -0.0
242,043 - OLJFJH_01480 0.51 -1.2
242,262 + OLJFJH_01480 0.80 -0.3
242,268 - OLJFJH_01480 0.80 +2.2
242,295 + OLJFJH_01480 0.84 +0.2
242,295 + OLJFJH_01480 0.84 +0.3
242,296 - OLJFJH_01480 0.84 -2.5
242,438 - -0.7
242,485 + -0.4
242,485 + +1.3
242,486 - -0.1
242,673 + OLJFJH_01485 0.15 -1.4
242,846 + OLJFJH_01485 0.28 -2.4
242,846 + OLJFJH_01485 0.28 -0.0
242,847 - OLJFJH_01485 0.28 -2.8
242,847 - OLJFJH_01485 0.28 -2.7
242,960 + OLJFJH_01485 0.37 -1.4
243,091 + OLJFJH_01485 0.47 -2.0
243,091 + OLJFJH_01485 0.47 -1.7
243,092 - OLJFJH_01485 0.47 -2.5
243,092 - OLJFJH_01485 0.47 -2.2
243,095 - OLJFJH_01485 0.47 -0.9
243,125 + OLJFJH_01485 0.50 -0.2
243,143 + OLJFJH_01485 0.51 +0.9
243,243 - OLJFJH_01485 0.59 -0.9
243,412 + OLJFJH_01485 0.72 -1.7
243,432 - OLJFJH_01485 0.74 -2.2
243,432 - OLJFJH_01485 0.74 +0.5
243,602 + OLJFJH_01485 0.87 -2.0
243,609 - OLJFJH_01485 0.87 -1.2
243,638 + OLJFJH_01485 0.90 -1.0
243,732 + -1.6
243,733 - +0.5
243,752 + -0.3
243,759 - -1.8
243,759 - +0.2
243,760 + -0.3
243,760 + -1.1
243,761 - -2.6
243,771 - -0.6
243,786 - +0.1
243,804 + -0.6
243,816 - -1.1
243,870 - OLJFJH_01490 0.10 -0.6
243,893 + OLJFJH_01490 0.13 -0.7
244,017 + OLJFJH_01490 0.26 -0.8
244,017 + OLJFJH_01490 0.26 -2.2
244,017 + OLJFJH_01490 0.26 -0.8
244,017 + OLJFJH_01490 0.26 -0.5
244,018 - OLJFJH_01490 0.26 -0.6
244,018 - OLJFJH_01490 0.26 -2.9
244,058 + OLJFJH_01490 0.31 -1.5
244,059 - OLJFJH_01490 0.31 -1.3
244,104 - OLJFJH_01490 0.35 +0.2
244,106 + OLJFJH_01490 0.36 -1.5
244,106 + OLJFJH_01490 0.36 -0.6
244,107 - OLJFJH_01490 0.36 -1.5
244,326 + OLJFJH_01490 0.59 -1.9
244,330 - OLJFJH_01490 0.60 -0.5
244,351 - OLJFJH_01490 0.62 -0.8
244,508 - OLJFJH_01490 0.79 -1.3
244,707 + +0.0
244,732 + -2.3
244,732 + -0.9
244,732 + -0.9
244,732 + -1.5
244,736 + -1.5
244,751 + -0.6
244,751 + -1.9

Or see this region's nucleotide sequence