Strain Fitness in Erwinia amylovora T8 around OLJFJH_01395

Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01385 and OLJFJH_01390 are separated by 189 nucleotidesOLJFJH_01390 and OLJFJH_01395 are separated by 132 nucleotidesOLJFJH_01395 and OLJFJH_01400 are separated by 14 nucleotides OLJFJH_01385: OLJFJH_01385 - type 3 dihydrofolate reductase, at 219,129 to 219,611 _01385 OLJFJH_01390: OLJFJH_01390 - lysine transporter LysE, at 219,801 to 220,415 _01390 OLJFJH_01395: OLJFJH_01395 - carbamoyl-phosphate synthase large subunit, at 220,548 to 223,772 _01395 OLJFJH_01400: OLJFJH_01400 - carbamoyl phosphate synthase small subunit, at 223,787 to 224,935 _01400 Position (kb) 220 221 222 223 224Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 219.614 kb on - strandat 219.614 kb on - strandat 219.648 kb on - strandat 219.648 kb on - strandat 219.648 kb on - strandat 219.651 kb on + strandat 219.651 kb on + strandat 219.686 kb on + strandat 219.691 kb on - strandat 219.691 kb on - strandat 219.711 kb on - strandat 219.800 kb on + strandat 219.800 kb on + strandat 219.801 kb on - strandat 219.801 kb on - strandat 219.818 kb on - strandat 220.111 kb on + strand, within OLJFJH_01390at 220.205 kb on + strand, within OLJFJH_01390at 220.252 kb on - strand, within OLJFJH_01390at 220.252 kb on - strand, within OLJFJH_01390at 220.325 kb on - strand, within OLJFJH_01390at 220.341 kb on - strand, within OLJFJH_01390at 220.341 kb on - strand, within OLJFJH_01390at 220.497 kb on + strandat 220.497 kb on + strandat 220.498 kb on - strandat 220.498 kb on - strandat 220.498 kb on - strandat 220.550 kb on - strandat 220.642 kb on - strandat 220.666 kb on + strandat 220.667 kb on - strandat 220.667 kb on - strandat 220.667 kb on - strandat 220.736 kb on + strandat 220.736 kb on + strandat 220.736 kb on + strandat 220.736 kb on + strandat 220.736 kb on + strandat 220.737 kb on - strandat 220.737 kb on - strandat 220.737 kb on - strandat 220.737 kb on - strandat 220.738 kb on + strandat 220.738 kb on + strandat 220.738 kb on + strandat 220.738 kb on + strandat 220.739 kb on - strandat 220.739 kb on - strandat 220.772 kb on + strandat 220.773 kb on - strandat 220.809 kb on + strandat 220.904 kb on + strand, within OLJFJH_01395at 220.959 kb on - strand, within OLJFJH_01395at 221.022 kb on + strand, within OLJFJH_01395at 221.023 kb on - strand, within OLJFJH_01395at 221.023 kb on - strand, within OLJFJH_01395at 221.261 kb on - strand, within OLJFJH_01395at 221.376 kb on - strand, within OLJFJH_01395at 221.429 kb on + strand, within OLJFJH_01395at 221.429 kb on + strand, within OLJFJH_01395at 221.563 kb on + strand, within OLJFJH_01395at 221.563 kb on + strand, within OLJFJH_01395at 221.620 kb on + strand, within OLJFJH_01395at 221.621 kb on - strand, within OLJFJH_01395at 221.924 kb on - strand, within OLJFJH_01395at 221.924 kb on - strand, within OLJFJH_01395at 221.944 kb on + strand, within OLJFJH_01395at 222.034 kb on + strand, within OLJFJH_01395at 222.133 kb on + strand, within OLJFJH_01395at 222.133 kb on + strand, within OLJFJH_01395at 222.134 kb on - strand, within OLJFJH_01395at 222.142 kb on + strand, within OLJFJH_01395at 222.142 kb on + strand, within OLJFJH_01395at 222.143 kb on - strand, within OLJFJH_01395at 222.148 kb on + strand, within OLJFJH_01395at 222.148 kb on + strand, within OLJFJH_01395at 222.149 kb on - strand, within OLJFJH_01395at 222.196 kb on + strand, within OLJFJH_01395at 222.197 kb on - strand, within OLJFJH_01395at 222.317 kb on - strand, within OLJFJH_01395at 222.321 kb on - strand, within OLJFJH_01395at 222.460 kb on + strand, within OLJFJH_01395at 222.460 kb on + strand, within OLJFJH_01395at 222.461 kb on - strand, within OLJFJH_01395at 222.712 kb on + strand, within OLJFJH_01395at 222.712 kb on + strand, within OLJFJH_01395at 222.712 kb on + strand, within OLJFJH_01395at 222.713 kb on - strand, within OLJFJH_01395at 222.782 kb on + strand, within OLJFJH_01395at 222.783 kb on - strand, within OLJFJH_01395at 223.029 kb on - strand, within OLJFJH_01395at 223.085 kb on + strand, within OLJFJH_01395at 223.224 kb on - strand, within OLJFJH_01395at 223.274 kb on + strand, within OLJFJH_01395at 223.275 kb on - strand, within OLJFJH_01395at 223.275 kb on - strand, within OLJFJH_01395at 223.275 kb on - strand, within OLJFJH_01395at 223.275 kb on - strand, within OLJFJH_01395at 223.322 kb on + strand, within OLJFJH_01395at 223.579 kb on + strandat 223.579 kb on + strandat 223.579 kb on + strandat 223.579 kb on + strandat 223.611 kb on - strandat 223.611 kb on - strandat 223.691 kb on - strandat 223.691 kb on - strandat 223.760 kb on + strandat 223.926 kb on - strand, within OLJFJH_01400at 223.949 kb on - strand, within OLJFJH_01400at 224.029 kb on + strand, within OLJFJH_01400at 224.030 kb on - strand, within OLJFJH_01400at 224.032 kb on + strand, within OLJFJH_01400at 224.114 kb on + strand, within OLJFJH_01400at 224.149 kb on + strand, within OLJFJH_01400at 224.314 kb on + strand, within OLJFJH_01400at 224.315 kb on - strand, within OLJFJH_01400at 224.315 kb on - strand, within OLJFJH_01400at 224.326 kb on + strand, within OLJFJH_01400at 224.326 kb on + strand, within OLJFJH_01400at 224.326 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.431 kb on + strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.432 kb on - strand, within OLJFJH_01400at 224.434 kb on - strand, within OLJFJH_01400at 224.434 kb on - strand, within OLJFJH_01400at 224.539 kb on + strand, within OLJFJH_01400at 224.542 kb on + strand, within OLJFJH_01400at 224.542 kb on + strand, within OLJFJH_01400at 224.542 kb on + strand, within OLJFJH_01400at 224.543 kb on - strand, within OLJFJH_01400at 224.681 kb on + strand, within OLJFJH_01400at 224.766 kb on + strand, within OLJFJH_01400at 224.770 kb on + strand, within OLJFJH_01400at 224.771 kb on - strand, within OLJFJH_01400at 224.771 kb on - strand, within OLJFJH_01400

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-8
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219,614 - +1.0
219,614 - +0.4
219,648 - +0.2
219,648 - -0.9
219,648 - +0.8
219,651 + -2.1
219,651 + -2.2
219,686 + -1.0
219,691 - -0.6
219,691 - +0.5
219,711 - -2.2
219,800 + +0.9
219,800 + -0.1
219,801 - -0.2
219,801 - -0.2
219,818 - -0.1
220,111 + OLJFJH_01390 0.50 -0.1
220,205 + OLJFJH_01390 0.66 +0.6
220,252 - OLJFJH_01390 0.73 -2.3
220,252 - OLJFJH_01390 0.73 -0.6
220,325 - OLJFJH_01390 0.85 -0.5
220,341 - OLJFJH_01390 0.88 -1.2
220,341 - OLJFJH_01390 0.88 -1.0
220,497 + +0.8
220,497 + -0.6
220,498 - -0.9
220,498 - -0.2
220,498 - +0.6
220,550 - +0.8
220,642 - -2.7
220,666 + -1.2
220,667 - -2.0
220,667 - -1.1
220,667 - -2.4
220,736 + -2.6
220,736 + -1.9
220,736 + -2.4
220,736 + -2.0
220,736 + -0.9
220,737 - -1.1
220,737 - -2.2
220,737 - -2.3
220,737 - -3.1
220,738 + -2.5
220,738 + -1.2
220,738 + -4.9
220,738 + +1.5
220,739 - -3.2
220,739 - -2.0
220,772 + +0.7
220,773 - -3.8
220,809 + -4.1
220,904 + OLJFJH_01395 0.11 -3.7
220,959 - OLJFJH_01395 0.13 -2.7
221,022 + OLJFJH_01395 0.15 -2.3
221,023 - OLJFJH_01395 0.15 -0.8
221,023 - OLJFJH_01395 0.15 -0.1
221,261 - OLJFJH_01395 0.22 -1.4
221,376 - OLJFJH_01395 0.26 -1.4
221,429 + OLJFJH_01395 0.27 +0.2
221,429 + OLJFJH_01395 0.27 -1.0
221,563 + OLJFJH_01395 0.31 -0.5
221,563 + OLJFJH_01395 0.31 -1.8
221,620 + OLJFJH_01395 0.33 -0.9
221,621 - OLJFJH_01395 0.33 -2.9
221,924 - OLJFJH_01395 0.43 -3.9
221,924 - OLJFJH_01395 0.43 -2.0
221,944 + OLJFJH_01395 0.43 +1.2
222,034 + OLJFJH_01395 0.46 -1.8
222,133 + OLJFJH_01395 0.49 -2.8
222,133 + OLJFJH_01395 0.49 -2.6
222,134 - OLJFJH_01395 0.49 +0.2
222,142 + OLJFJH_01395 0.49 -3.7
222,142 + OLJFJH_01395 0.49 -2.2
222,143 - OLJFJH_01395 0.49 -2.1
222,148 + OLJFJH_01395 0.50 +0.7
222,148 + OLJFJH_01395 0.50 -2.1
222,149 - OLJFJH_01395 0.50 -4.5
222,196 + OLJFJH_01395 0.51 -2.0
222,197 - OLJFJH_01395 0.51 -3.4
222,317 - OLJFJH_01395 0.55 -0.1
222,321 - OLJFJH_01395 0.55 -2.1
222,460 + OLJFJH_01395 0.59 -1.4
222,460 + OLJFJH_01395 0.59 -2.4
222,461 - OLJFJH_01395 0.59 -3.0
222,712 + OLJFJH_01395 0.67 -2.0
222,712 + OLJFJH_01395 0.67 -1.1
222,712 + OLJFJH_01395 0.67 -1.0
222,713 - OLJFJH_01395 0.67 -0.3
222,782 + OLJFJH_01395 0.69 -3.9
222,783 - OLJFJH_01395 0.69 -1.4
223,029 - OLJFJH_01395 0.77 -3.9
223,085 + OLJFJH_01395 0.79 -1.2
223,224 - OLJFJH_01395 0.83 -3.5
223,274 + OLJFJH_01395 0.85 -1.9
223,275 - OLJFJH_01395 0.85 -2.4
223,275 - OLJFJH_01395 0.85 -2.2
223,275 - OLJFJH_01395 0.85 -2.7
223,275 - OLJFJH_01395 0.85 -5.3
223,322 + OLJFJH_01395 0.86 -1.5
223,579 + +0.2
223,579 + -3.5
223,579 + -2.2
223,579 + -2.8
223,611 - -3.1
223,611 - -1.7
223,691 - -1.5
223,691 - -4.4
223,760 + -1.5
223,926 - OLJFJH_01400 0.12 -2.9
223,949 - OLJFJH_01400 0.14 -1.0
224,029 + OLJFJH_01400 0.21 -3.3
224,030 - OLJFJH_01400 0.21 -0.5
224,032 + OLJFJH_01400 0.21 -3.1
224,114 + OLJFJH_01400 0.28 -1.4
224,149 + OLJFJH_01400 0.32 -1.8
224,314 + OLJFJH_01400 0.46 -2.1
224,315 - OLJFJH_01400 0.46 -2.8
224,315 - OLJFJH_01400 0.46 -2.7
224,326 + OLJFJH_01400 0.47 +0.1
224,326 + OLJFJH_01400 0.47 -3.5
224,326 + OLJFJH_01400 0.47 -1.8
224,431 + OLJFJH_01400 0.56 -1.8
224,431 + OLJFJH_01400 0.56 -1.9
224,431 + OLJFJH_01400 0.56 -4.4
224,431 + OLJFJH_01400 0.56 -1.6
224,431 + OLJFJH_01400 0.56 -2.8
224,431 + OLJFJH_01400 0.56 +0.7
224,431 + OLJFJH_01400 0.56 -1.2
224,431 + OLJFJH_01400 0.56 -2.5
224,432 - OLJFJH_01400 0.56 -3.6
224,432 - OLJFJH_01400 0.56 -1.0
224,432 - OLJFJH_01400 0.56 -3.2
224,432 - OLJFJH_01400 0.56 -1.2
224,432 - OLJFJH_01400 0.56 -0.6
224,432 - OLJFJH_01400 0.56 -3.6
224,432 - OLJFJH_01400 0.56 -2.1
224,432 - OLJFJH_01400 0.56 -1.5
224,432 - OLJFJH_01400 0.56 -3.9
224,432 - OLJFJH_01400 0.56 -1.3
224,432 - OLJFJH_01400 0.56 -2.7
224,432 - OLJFJH_01400 0.56 -1.3
224,432 - OLJFJH_01400 0.56 -3.9
224,432 - OLJFJH_01400 0.56 -2.4
224,432 - OLJFJH_01400 0.56 -2.5
224,432 - OLJFJH_01400 0.56 -4.1
224,434 - OLJFJH_01400 0.56 -2.9
224,434 - OLJFJH_01400 0.56 -1.9
224,539 + OLJFJH_01400 0.65 -2.1
224,542 + OLJFJH_01400 0.66 -1.1
224,542 + OLJFJH_01400 0.66 -2.2
224,542 + OLJFJH_01400 0.66 -3.2
224,543 - OLJFJH_01400 0.66 -0.5
224,681 + OLJFJH_01400 0.78 -3.8
224,766 + OLJFJH_01400 0.85 -1.6
224,770 + OLJFJH_01400 0.86 -3.1
224,771 - OLJFJH_01400 0.86 -3.9
224,771 - OLJFJH_01400 0.86 -0.1

Or see this region's nucleotide sequence