Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05607 and BACOVA_05608 are separated by 30 nucleotides BACOVA_05608 and BACOVA_05609 are separated by 84 nucleotides
BACOVA_05607: BACOVA_05607 - hypothetical protein, at 1,124,039 to 1,126,405
_05607
BACOVA_05608: BACOVA_05608 - hypothetical protein, at 1,126,436 to 1,126,540
_05608
BACOVA_05609: BACOVA_05609 - hypothetical protein, at 1,126,625 to 1,127,995
_05609
Position (kb)
1126
1127 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1125.497 kb on + strand, within BACOVA_05607 at 1125.533 kb on - strand, within BACOVA_05607 at 1125.564 kb on - strand, within BACOVA_05607 at 1125.564 kb on - strand, within BACOVA_05607 at 1125.577 kb on - strand, within BACOVA_05607 at 1125.596 kb on + strand, within BACOVA_05607 at 1125.597 kb on - strand, within BACOVA_05607 at 1125.598 kb on + strand, within BACOVA_05607 at 1125.599 kb on - strand, within BACOVA_05607 at 1125.651 kb on - strand, within BACOVA_05607 at 1125.652 kb on + strand, within BACOVA_05607 at 1125.653 kb on - strand, within BACOVA_05607 at 1125.685 kb on + strand, within BACOVA_05607 at 1125.689 kb on - strand, within BACOVA_05607 at 1125.708 kb on + strand, within BACOVA_05607 at 1125.709 kb on - strand, within BACOVA_05607 at 1125.770 kb on - strand, within BACOVA_05607 at 1125.796 kb on + strand, within BACOVA_05607 at 1125.797 kb on - strand, within BACOVA_05607 at 1125.903 kb on - strand, within BACOVA_05607 at 1125.932 kb on - strand, within BACOVA_05607 at 1125.993 kb on + strand, within BACOVA_05607 at 1125.993 kb on + strand, within BACOVA_05607 at 1125.997 kb on + strand, within BACOVA_05607 at 1125.998 kb on - strand, within BACOVA_05607 at 1126.004 kb on + strand, within BACOVA_05607 at 1126.042 kb on + strand, within BACOVA_05607 at 1126.043 kb on - strand, within BACOVA_05607 at 1126.043 kb on - strand, within BACOVA_05607 at 1126.104 kb on - strand, within BACOVA_05607 at 1126.105 kb on + strand, within BACOVA_05607 at 1126.155 kb on + strand, within BACOVA_05607 at 1126.156 kb on - strand, within BACOVA_05607 at 1126.156 kb on - strand, within BACOVA_05607 at 1126.248 kb on + strand at 1126.280 kb on + strand at 1126.280 kb on + strand at 1126.316 kb on + strand at 1126.350 kb on + strand at 1126.362 kb on + strand at 1126.363 kb on - strand at 1126.363 kb on - strand at 1126.394 kb on - strand at 1126.494 kb on + strand, within BACOVA_05608 at 1126.495 kb on - strand, within BACOVA_05608 at 1126.505 kb on - strand, within BACOVA_05608 at 1126.511 kb on + strand, within BACOVA_05608 at 1126.519 kb on + strand, within BACOVA_05608 at 1126.519 kb on + strand, within BACOVA_05608 at 1126.520 kb on - strand, within BACOVA_05608 at 1126.584 kb on - strand at 1126.584 kb on - strand at 1126.584 kb on - strand at 1126.656 kb on + strand at 1126.695 kb on + strand at 1126.739 kb on - strand at 1126.800 kb on - strand, within BACOVA_05609 at 1126.801 kb on + strand, within BACOVA_05609 at 1126.802 kb on - strand, within BACOVA_05609 at 1126.814 kb on - strand, within BACOVA_05609 at 1126.816 kb on + strand, within BACOVA_05609 at 1126.816 kb on + strand, within BACOVA_05609 at 1126.855 kb on - strand, within BACOVA_05609 at 1126.904 kb on - strand, within BACOVA_05609 at 1126.967 kb on + strand, within BACOVA_05609 at 1126.969 kb on + strand, within BACOVA_05609 at 1126.970 kb on - strand, within BACOVA_05609 at 1126.972 kb on + strand, within BACOVA_05609 at 1126.972 kb on + strand, within BACOVA_05609 at 1126.972 kb on + strand, within BACOVA_05609 at 1127.023 kb on + strand, within BACOVA_05609 at 1127.093 kb on - strand, within BACOVA_05609 at 1127.137 kb on + strand, within BACOVA_05609 at 1127.137 kb on + strand, within BACOVA_05609 at 1127.215 kb on + strand, within BACOVA_05609 at 1127.215 kb on + strand, within BACOVA_05609 at 1127.216 kb on - strand, within BACOVA_05609 at 1127.216 kb on - strand, within BACOVA_05609 at 1127.251 kb on + strand, within BACOVA_05609 at 1127.251 kb on + strand, within BACOVA_05609 at 1127.253 kb on + strand, within BACOVA_05609 at 1127.254 kb on - strand, within BACOVA_05609 at 1127.317 kb on + strand, within BACOVA_05609 at 1127.318 kb on - strand, within BACOVA_05609 at 1127.331 kb on + strand, within BACOVA_05609 at 1127.335 kb on - strand, within BACOVA_05609 at 1127.344 kb on - strand, within BACOVA_05609 at 1127.348 kb on - strand, within BACOVA_05609 at 1127.352 kb on + strand, within BACOVA_05609 at 1127.352 kb on + strand, within BACOVA_05609 at 1127.353 kb on - strand, within BACOVA_05609 at 1127.369 kb on - strand, within BACOVA_05609 at 1127.401 kb on + strand, within BACOVA_05609 at 1127.407 kb on + strand, within BACOVA_05609 at 1127.447 kb on - strand, within BACOVA_05609 at 1127.460 kb on + strand, within BACOVA_05609 at 1127.504 kb on - strand, within BACOVA_05609 at 1127.508 kb on + strand, within BACOVA_05609
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 1,125,497 + BACOVA_05607 0.62 -0.2 1,125,533 - BACOVA_05607 0.63 -0.2 1,125,564 - BACOVA_05607 0.64 -1.2 1,125,564 - BACOVA_05607 0.64 +0.4 1,125,577 - BACOVA_05607 0.65 +0.3 1,125,596 + BACOVA_05607 0.66 +1.4 1,125,597 - BACOVA_05607 0.66 -0.8 1,125,598 + BACOVA_05607 0.66 +1.3 1,125,599 - BACOVA_05607 0.66 -1.5 1,125,651 - BACOVA_05607 0.68 +1.4 1,125,652 + BACOVA_05607 0.68 +1.3 1,125,653 - BACOVA_05607 0.68 -1.1 1,125,685 + BACOVA_05607 0.70 -0.9 1,125,689 - BACOVA_05607 0.70 -0.6 1,125,708 + BACOVA_05607 0.71 +2.0 1,125,709 - BACOVA_05607 0.71 -0.3 1,125,770 - BACOVA_05607 0.73 -1.9 1,125,796 + BACOVA_05607 0.74 +0.4 1,125,797 - BACOVA_05607 0.74 -1.7 1,125,903 - BACOVA_05607 0.79 +1.5 1,125,932 - BACOVA_05607 0.80 +0.1 1,125,993 + BACOVA_05607 0.83 +0.2 1,125,993 + BACOVA_05607 0.83 -0.5 1,125,997 + BACOVA_05607 0.83 -1.8 1,125,998 - BACOVA_05607 0.83 -1.3 1,126,004 + BACOVA_05607 0.83 -0.5 1,126,042 + BACOVA_05607 0.85 -1.0 1,126,043 - BACOVA_05607 0.85 +0.9 1,126,043 - BACOVA_05607 0.85 -0.2 1,126,104 - BACOVA_05607 0.87 -0.5 1,126,105 + BACOVA_05607 0.87 -1.0 1,126,155 + BACOVA_05607 0.89 +0.0 1,126,156 - BACOVA_05607 0.89 -0.2 1,126,156 - BACOVA_05607 0.89 +0.9 1,126,248 + -1.7 1,126,280 + +0.2 1,126,280 + +0.5 1,126,316 + +0.3 1,126,350 + +0.3 1,126,362 + +0.4 1,126,363 - +1.6 1,126,363 - +0.7 1,126,394 - -1.7 1,126,494 + BACOVA_05608 0.55 +0.5 1,126,495 - BACOVA_05608 0.56 -0.2 1,126,505 - BACOVA_05608 0.66 -0.4 1,126,511 + BACOVA_05608 0.71 +1.3 1,126,519 + BACOVA_05608 0.79 -0.1 1,126,519 + BACOVA_05608 0.79 +0.3 1,126,520 - BACOVA_05608 0.80 +1.9 1,126,584 - -0.3 1,126,584 - +1.2 1,126,584 - +1.3 1,126,656 + -0.5 1,126,695 + -1.5 1,126,739 - +0.9 1,126,800 - BACOVA_05609 0.13 +1.3 1,126,801 + BACOVA_05609 0.13 -0.2 1,126,802 - BACOVA_05609 0.13 +0.0 1,126,814 - BACOVA_05609 0.14 +0.6 1,126,816 + BACOVA_05609 0.14 +0.9 1,126,816 + BACOVA_05609 0.14 -0.7 1,126,855 - BACOVA_05609 0.17 -1.9 1,126,904 - BACOVA_05609 0.20 +1.0 1,126,967 + BACOVA_05609 0.25 -0.8 1,126,969 + BACOVA_05609 0.25 -0.1 1,126,970 - BACOVA_05609 0.25 -1.1 1,126,972 + BACOVA_05609 0.25 -1.1 1,126,972 + BACOVA_05609 0.25 +0.4 1,126,972 + BACOVA_05609 0.25 -1.1 1,127,023 + BACOVA_05609 0.29 +1.2 1,127,093 - BACOVA_05609 0.34 +1.0 1,127,137 + BACOVA_05609 0.37 +0.3 1,127,137 + BACOVA_05609 0.37 -0.4 1,127,215 + BACOVA_05609 0.43 +0.4 1,127,215 + BACOVA_05609 0.43 -0.7 1,127,216 - BACOVA_05609 0.43 +0.3 1,127,216 - BACOVA_05609 0.43 -0.1 1,127,251 + BACOVA_05609 0.46 -0.7 1,127,251 + BACOVA_05609 0.46 +0.7 1,127,253 + BACOVA_05609 0.46 -1.7 1,127,254 - BACOVA_05609 0.46 +0.1 1,127,317 + BACOVA_05609 0.50 +0.9 1,127,318 - BACOVA_05609 0.51 +0.2 1,127,331 + BACOVA_05609 0.51 -0.1 1,127,335 - BACOVA_05609 0.52 +0.1 1,127,344 - BACOVA_05609 0.52 +0.3 1,127,348 - BACOVA_05609 0.53 -0.6 1,127,352 + BACOVA_05609 0.53 -0.4 1,127,352 + BACOVA_05609 0.53 -1.1 1,127,353 - BACOVA_05609 0.53 +0.9 1,127,369 - BACOVA_05609 0.54 -0.5 1,127,401 + BACOVA_05609 0.57 -0.6 1,127,407 + BACOVA_05609 0.57 -0.1 1,127,447 - BACOVA_05609 0.60 +0.4 1,127,460 + BACOVA_05609 0.61 -1.4 1,127,504 - BACOVA_05609 0.64 -1.7 1,127,508 + BACOVA_05609 0.64 -0.1
Or see this region's nucleotide sequence