Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05604 and BACOVA_05605 are separated by 226 nucleotides BACOVA_05605 and BACOVA_05606 are separated by 26 nucleotides
BACOVA_05604: BACOVA_05604 - hypothetical protein, at 1,118,402 to 1,121,167
_05604
BACOVA_05605: BACOVA_05605 - hypothetical protein, at 1,121,394 to 1,121,954
_05605
BACOVA_05606: BACOVA_05606 - hypothetical protein, at 1,121,981 to 1,124,014
_05606
Position (kb)
1121
1122 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1120.475 kb on + strand, within BACOVA_05604 at 1120.475 kb on + strand, within BACOVA_05604 at 1120.488 kb on - strand, within BACOVA_05604 at 1120.514 kb on - strand, within BACOVA_05604 at 1120.539 kb on + strand, within BACOVA_05604 at 1120.539 kb on + strand, within BACOVA_05604 at 1120.540 kb on - strand, within BACOVA_05604 at 1120.543 kb on + strand, within BACOVA_05604 at 1120.543 kb on + strand, within BACOVA_05604 at 1120.544 kb on - strand, within BACOVA_05604 at 1120.544 kb on - strand, within BACOVA_05604 at 1120.544 kb on - strand, within BACOVA_05604 at 1120.552 kb on + strand, within BACOVA_05604 at 1120.553 kb on - strand, within BACOVA_05604 at 1120.567 kb on + strand, within BACOVA_05604 at 1120.569 kb on + strand, within BACOVA_05604 at 1120.569 kb on + strand, within BACOVA_05604 at 1120.571 kb on + strand, within BACOVA_05604 at 1120.571 kb on + strand, within BACOVA_05604 at 1120.571 kb on + strand, within BACOVA_05604 at 1120.645 kb on - strand, within BACOVA_05604 at 1120.668 kb on - strand, within BACOVA_05604 at 1120.668 kb on - strand, within BACOVA_05604 at 1120.669 kb on + strand, within BACOVA_05604 at 1120.670 kb on - strand, within BACOVA_05604 at 1120.670 kb on - strand, within BACOVA_05604 at 1120.670 kb on - strand, within BACOVA_05604 at 1120.672 kb on + strand, within BACOVA_05604 at 1120.675 kb on - strand, within BACOVA_05604 at 1120.748 kb on + strand, within BACOVA_05604 at 1120.749 kb on - strand, within BACOVA_05604 at 1120.760 kb on - strand, within BACOVA_05604 at 1120.760 kb on - strand, within BACOVA_05604 at 1120.760 kb on - strand, within BACOVA_05604 at 1120.864 kb on + strand, within BACOVA_05604 at 1120.865 kb on - strand, within BACOVA_05604 at 1120.866 kb on + strand, within BACOVA_05604 at 1120.867 kb on - strand, within BACOVA_05604 at 1120.867 kb on - strand, within BACOVA_05604 at 1120.884 kb on + strand, within BACOVA_05604 at 1120.910 kb on + strand at 1120.911 kb on - strand at 1121.047 kb on - strand at 1121.076 kb on - strand at 1121.080 kb on + strand at 1121.098 kb on + strand at 1121.099 kb on - strand at 1121.099 kb on - strand at 1121.151 kb on + strand at 1121.152 kb on - strand at 1121.161 kb on + strand at 1121.198 kb on - strand at 1121.211 kb on + strand at 1121.211 kb on + strand at 1121.211 kb on + strand at 1121.217 kb on - strand at 1121.218 kb on + strand at 1121.218 kb on + strand at 1121.222 kb on - strand at 1121.270 kb on + strand at 1121.280 kb on + strand at 1121.281 kb on - strand at 1121.281 kb on - strand at 1121.321 kb on + strand at 1121.321 kb on + strand at 1121.321 kb on + strand at 1121.322 kb on - strand at 1121.322 kb on - strand at 1121.341 kb on - strand at 1121.364 kb on - strand at 1121.401 kb on + strand at 1121.401 kb on + strand at 1121.402 kb on - strand at 1121.402 kb on - strand at 1121.403 kb on + strand at 1121.403 kb on + strand at 1121.404 kb on - strand at 1121.452 kb on + strand, within BACOVA_05605 at 1121.455 kb on + strand, within BACOVA_05605 at 1121.468 kb on - strand, within BACOVA_05605 at 1121.468 kb on - strand, within BACOVA_05605 at 1121.468 kb on - strand, within BACOVA_05605 at 1121.559 kb on - strand, within BACOVA_05605 at 1121.573 kb on - strand, within BACOVA_05605 at 1121.603 kb on + strand, within BACOVA_05605 at 1121.604 kb on - strand, within BACOVA_05605 at 1121.615 kb on + strand, within BACOVA_05605 at 1121.615 kb on + strand, within BACOVA_05605 at 1121.615 kb on + strand, within BACOVA_05605 at 1121.718 kb on - strand, within BACOVA_05605 at 1121.772 kb on + strand, within BACOVA_05605 at 1121.773 kb on - strand, within BACOVA_05605 at 1121.778 kb on + strand, within BACOVA_05605 at 1121.853 kb on - strand, within BACOVA_05605 at 1121.862 kb on - strand, within BACOVA_05605 at 1121.867 kb on + strand, within BACOVA_05605 at 1121.894 kb on + strand, within BACOVA_05605 at 1121.895 kb on - strand, within BACOVA_05605 at 1121.897 kb on + strand, within BACOVA_05605 at 1121.898 kb on - strand, within BACOVA_05605 at 1121.940 kb on + strand at 1121.941 kb on - strand at 1121.941 kb on - strand at 1121.962 kb on + strand at 1121.963 kb on - strand at 1121.963 kb on - strand at 1122.018 kb on + strand at 1122.019 kb on - strand at 1122.019 kb on - strand at 1122.054 kb on + strand at 1122.054 kb on + strand at 1122.121 kb on - strand at 1122.151 kb on + strand at 1122.153 kb on + strand at 1122.217 kb on + strand, within BACOVA_05606 at 1122.277 kb on - strand, within BACOVA_05606 at 1122.315 kb on - strand, within BACOVA_05606 at 1122.356 kb on - strand, within BACOVA_05606 at 1122.380 kb on + strand, within BACOVA_05606 at 1122.424 kb on + strand, within BACOVA_05606 at 1122.425 kb on - strand, within BACOVA_05606 at 1122.425 kb on - strand, within BACOVA_05606 at 1122.517 kb on + strand, within BACOVA_05606 at 1122.517 kb on + strand, within BACOVA_05606 at 1122.521 kb on + strand, within BACOVA_05606 at 1122.521 kb on + strand, within BACOVA_05606 at 1122.522 kb on - strand, within BACOVA_05606 at 1122.524 kb on - strand, within BACOVA_05606 at 1122.526 kb on + strand, within BACOVA_05606 at 1122.546 kb on - strand, within BACOVA_05606 at 1122.546 kb on - strand, within BACOVA_05606 at 1122.551 kb on + strand, within BACOVA_05606 at 1122.552 kb on - strand, within BACOVA_05606 at 1122.556 kb on + strand, within BACOVA_05606 at 1122.622 kb on + strand, within BACOVA_05606 at 1122.629 kb on + strand, within BACOVA_05606 at 1122.641 kb on - strand, within BACOVA_05606 at 1122.641 kb on - strand, within BACOVA_05606 at 1122.645 kb on - strand, within BACOVA_05606 at 1122.645 kb on - strand, within BACOVA_05606 at 1122.653 kb on + strand, within BACOVA_05606 at 1122.710 kb on - strand, within BACOVA_05606 at 1122.717 kb on - strand, within BACOVA_05606 at 1122.775 kb on + strand, within BACOVA_05606 at 1122.776 kb on - strand, within BACOVA_05606 at 1122.810 kb on - strand, within BACOVA_05606
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 1,120,475 + BACOVA_05604 0.75 +0.3 1,120,475 + BACOVA_05604 0.75 -0.1 1,120,488 - BACOVA_05604 0.75 -0.3 1,120,514 - BACOVA_05604 0.76 +0.3 1,120,539 + BACOVA_05604 0.77 -0.5 1,120,539 + BACOVA_05604 0.77 +0.5 1,120,540 - BACOVA_05604 0.77 -0.5 1,120,543 + BACOVA_05604 0.77 -2.3 1,120,543 + BACOVA_05604 0.77 -0.9 1,120,544 - BACOVA_05604 0.77 -1.0 1,120,544 - BACOVA_05604 0.77 +1.6 1,120,544 - BACOVA_05604 0.77 -0.2 1,120,552 + BACOVA_05604 0.78 -0.5 1,120,553 - BACOVA_05604 0.78 +0.7 1,120,567 + BACOVA_05604 0.78 -0.5 1,120,569 + BACOVA_05604 0.78 -3.4 1,120,569 + BACOVA_05604 0.78 +0.9 1,120,571 + BACOVA_05604 0.78 +0.9 1,120,571 + BACOVA_05604 0.78 +0.1 1,120,571 + BACOVA_05604 0.78 +0.2 1,120,645 - BACOVA_05604 0.81 +0.1 1,120,668 - BACOVA_05604 0.82 -1.1 1,120,668 - BACOVA_05604 0.82 +0.6 1,120,669 + BACOVA_05604 0.82 +1.6 1,120,670 - BACOVA_05604 0.82 +1.1 1,120,670 - BACOVA_05604 0.82 -1.3 1,120,670 - BACOVA_05604 0.82 +0.3 1,120,672 + BACOVA_05604 0.82 +1.2 1,120,675 - BACOVA_05604 0.82 -0.1 1,120,748 + BACOVA_05604 0.85 +0.3 1,120,749 - BACOVA_05604 0.85 +3.7 1,120,760 - BACOVA_05604 0.85 -0.1 1,120,760 - BACOVA_05604 0.85 +0.9 1,120,760 - BACOVA_05604 0.85 +0.9 1,120,864 + BACOVA_05604 0.89 -0.5 1,120,865 - BACOVA_05604 0.89 -0.4 1,120,866 + BACOVA_05604 0.89 +0.4 1,120,867 - BACOVA_05604 0.89 +0.2 1,120,867 - BACOVA_05604 0.89 +0.4 1,120,884 + BACOVA_05604 0.90 -0.2 1,120,910 + -0.1 1,120,911 - -0.2 1,121,047 - -2.1 1,121,076 - -1.1 1,121,080 + -1.2 1,121,098 + -1.9 1,121,099 - -0.6 1,121,099 - -2.5 1,121,151 + -1.7 1,121,152 - +0.4 1,121,161 + -0.9 1,121,198 - -1.5 1,121,211 + +0.2 1,121,211 + +1.1 1,121,211 + -1.1 1,121,217 - -0.4 1,121,218 + -0.9 1,121,218 + -1.3 1,121,222 - -0.2 1,121,270 + +0.3 1,121,280 + +1.9 1,121,281 - +0.4 1,121,281 - +0.5 1,121,321 + -0.2 1,121,321 + -0.1 1,121,321 + +2.7 1,121,322 - +1.1 1,121,322 - +0.9 1,121,341 - -0.6 1,121,364 - +0.0 1,121,401 + -0.8 1,121,401 + +1.4 1,121,402 - -0.0 1,121,402 - -0.6 1,121,403 + +0.4 1,121,403 + +1.2 1,121,404 - +0.6 1,121,452 + BACOVA_05605 0.10 +0.2 1,121,455 + BACOVA_05605 0.11 -0.9 1,121,468 - BACOVA_05605 0.13 -0.7 1,121,468 - BACOVA_05605 0.13 +0.7 1,121,468 - BACOVA_05605 0.13 +1.3 1,121,559 - BACOVA_05605 0.29 -0.4 1,121,573 - BACOVA_05605 0.32 -1.5 1,121,603 + BACOVA_05605 0.37 +0.3 1,121,604 - BACOVA_05605 0.37 +0.5 1,121,615 + BACOVA_05605 0.39 -1.7 1,121,615 + BACOVA_05605 0.39 -0.8 1,121,615 + BACOVA_05605 0.39 -0.2 1,121,718 - BACOVA_05605 0.58 +1.6 1,121,772 + BACOVA_05605 0.67 +1.8 1,121,773 - BACOVA_05605 0.68 -0.6 1,121,778 + BACOVA_05605 0.68 -1.0 1,121,853 - BACOVA_05605 0.82 -2.5 1,121,862 - BACOVA_05605 0.83 +0.9 1,121,867 + BACOVA_05605 0.84 +1.4 1,121,894 + BACOVA_05605 0.89 +0.3 1,121,895 - BACOVA_05605 0.89 +0.4 1,121,897 + BACOVA_05605 0.90 +0.2 1,121,898 - BACOVA_05605 0.90 +0.8 1,121,940 + -2.2 1,121,941 - +0.2 1,121,941 - -0.3 1,121,962 + -0.7 1,121,963 - -0.4 1,121,963 - -0.2 1,122,018 + -0.1 1,122,019 - +0.6 1,122,019 - -1.9 1,122,054 + -0.3 1,122,054 + -0.5 1,122,121 - +1.3 1,122,151 + +0.9 1,122,153 + +1.2 1,122,217 + BACOVA_05606 0.12 +0.3 1,122,277 - BACOVA_05606 0.15 +1.1 1,122,315 - BACOVA_05606 0.16 +0.6 1,122,356 - BACOVA_05606 0.18 +0.5 1,122,380 + BACOVA_05606 0.20 +0.3 1,122,424 + BACOVA_05606 0.22 -1.4 1,122,425 - BACOVA_05606 0.22 +0.9 1,122,425 - BACOVA_05606 0.22 +1.3 1,122,517 + BACOVA_05606 0.26 -0.7 1,122,517 + BACOVA_05606 0.26 -0.1 1,122,521 + BACOVA_05606 0.27 -0.1 1,122,521 + BACOVA_05606 0.27 -0.0 1,122,522 - BACOVA_05606 0.27 +0.6 1,122,524 - BACOVA_05606 0.27 +0.1 1,122,526 + BACOVA_05606 0.27 -1.1 1,122,546 - BACOVA_05606 0.28 -0.6 1,122,546 - BACOVA_05606 0.28 +0.3 1,122,551 + BACOVA_05606 0.28 +0.9 1,122,552 - BACOVA_05606 0.28 +0.1 1,122,556 + BACOVA_05606 0.28 -0.7 1,122,622 + BACOVA_05606 0.32 +0.5 1,122,629 + BACOVA_05606 0.32 +0.9 1,122,641 - BACOVA_05606 0.32 +0.4 1,122,641 - BACOVA_05606 0.32 +2.5 1,122,645 - BACOVA_05606 0.33 +2.7 1,122,645 - BACOVA_05606 0.33 -0.5 1,122,653 + BACOVA_05606 0.33 -0.1 1,122,710 - BACOVA_05606 0.36 +2.3 1,122,717 - BACOVA_05606 0.36 -0.0 1,122,775 + BACOVA_05606 0.39 +0.6 1,122,776 - BACOVA_05606 0.39 +0.5 1,122,810 - BACOVA_05606 0.41 +0.9
Or see this region's nucleotide sequence