Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05310 and BACOVA_05311 are separated by 31 nucleotides BACOVA_05311 and BACOVA_05312 are separated by 21 nucleotides BACOVA_05312 and BACOVA_05313 are separated by 71 nucleotides
BACOVA_05310: BACOVA_05310 - MarC family integral membrane protein, at 799,407 to 800,039
_05310
BACOVA_05311: BACOVA_05311 - hypothetical protein, at 800,071 to 800,595
_05311
BACOVA_05312: BACOVA_05312 - acetyltransferase, GNAT family, at 800,617 to 802,029
_05312
BACOVA_05313: BACOVA_05313 - putative beta-lactamase, at 802,101 to 802,982
_05313
Position (kb) 800
801
802
803 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 799.626 kb on - strand, within BACOVA_05310 at 799.667 kb on + strand, within BACOVA_05310 at 799.749 kb on - strand, within BACOVA_05310 at 799.770 kb on - strand, within BACOVA_05310 at 799.778 kb on + strand, within BACOVA_05310 at 799.860 kb on - strand, within BACOVA_05310 at 799.862 kb on + strand, within BACOVA_05310 at 799.869 kb on - strand, within BACOVA_05310 at 799.888 kb on + strand, within BACOVA_05310 at 799.953 kb on - strand, within BACOVA_05310 at 800.006 kb on + strand at 800.006 kb on + strand at 800.006 kb on + strand at 800.006 kb on + strand at 800.006 kb on + strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.007 kb on - strand at 800.008 kb on + strand at 800.018 kb on - strand at 800.033 kb on - strand at 800.038 kb on - strand at 800.278 kb on + strand, within BACOVA_05311 at 800.327 kb on - strand, within BACOVA_05311 at 800.439 kb on + strand, within BACOVA_05311 at 800.440 kb on - strand, within BACOVA_05311 at 800.444 kb on - strand, within BACOVA_05311 at 800.444 kb on - strand, within BACOVA_05311 at 800.459 kb on + strand, within BACOVA_05311 at 800.469 kb on + strand, within BACOVA_05311 at 800.528 kb on - strand, within BACOVA_05311 at 800.528 kb on - strand, within BACOVA_05311 at 800.540 kb on - strand, within BACOVA_05311 at 800.540 kb on - strand, within BACOVA_05311 at 800.550 kb on + strand at 800.587 kb on + strand at 800.588 kb on - strand at 800.597 kb on + strand at 800.598 kb on - strand at 800.618 kb on + strand at 800.618 kb on + strand at 800.618 kb on + strand at 800.618 kb on + strand at 800.619 kb on - strand at 800.619 kb on - strand at 800.730 kb on - strand at 800.762 kb on - strand, within BACOVA_05312 at 800.772 kb on + strand, within BACOVA_05312 at 800.778 kb on + strand, within BACOVA_05312 at 800.779 kb on - strand, within BACOVA_05312 at 800.803 kb on + strand, within BACOVA_05312 at 800.803 kb on + strand, within BACOVA_05312 at 800.804 kb on - strand, within BACOVA_05312 at 800.845 kb on + strand, within BACOVA_05312 at 800.845 kb on + strand, within BACOVA_05312 at 800.938 kb on + strand, within BACOVA_05312 at 800.939 kb on - strand, within BACOVA_05312 at 800.942 kb on + strand, within BACOVA_05312 at 800.976 kb on + strand, within BACOVA_05312 at 801.057 kb on + strand, within BACOVA_05312 at 801.080 kb on + strand, within BACOVA_05312 at 801.099 kb on - strand, within BACOVA_05312 at 801.099 kb on - strand, within BACOVA_05312 at 801.139 kb on - strand, within BACOVA_05312 at 801.147 kb on - strand, within BACOVA_05312 at 801.204 kb on + strand, within BACOVA_05312 at 801.275 kb on + strand, within BACOVA_05312 at 801.275 kb on + strand, within BACOVA_05312 at 801.276 kb on - strand, within BACOVA_05312 at 801.385 kb on - strand, within BACOVA_05312 at 801.385 kb on - strand, within BACOVA_05312 at 801.392 kb on - strand, within BACOVA_05312 at 801.392 kb on - strand, within BACOVA_05312 at 801.406 kb on + strand, within BACOVA_05312 at 801.407 kb on - strand, within BACOVA_05312 at 801.423 kb on + strand, within BACOVA_05312 at 801.423 kb on + strand, within BACOVA_05312 at 801.424 kb on - strand, within BACOVA_05312 at 801.424 kb on - strand, within BACOVA_05312 at 801.462 kb on + strand, within BACOVA_05312 at 801.591 kb on + strand, within BACOVA_05312 at 801.591 kb on + strand, within BACOVA_05312 at 801.592 kb on - strand, within BACOVA_05312 at 801.594 kb on + strand, within BACOVA_05312 at 801.598 kb on + strand, within BACOVA_05312 at 801.689 kb on - strand, within BACOVA_05312 at 801.702 kb on - strand, within BACOVA_05312 at 801.717 kb on + strand, within BACOVA_05312 at 801.738 kb on + strand, within BACOVA_05312 at 801.738 kb on + strand, within BACOVA_05312 at 801.739 kb on - strand, within BACOVA_05312 at 801.850 kb on + strand, within BACOVA_05312 at 801.851 kb on - strand, within BACOVA_05312 at 801.856 kb on + strand, within BACOVA_05312 at 801.856 kb on + strand, within BACOVA_05312 at 801.856 kb on + strand, within BACOVA_05312 at 801.857 kb on - strand, within BACOVA_05312 at 801.858 kb on + strand, within BACOVA_05312 at 801.858 kb on + strand, within BACOVA_05312 at 801.901 kb on - strand at 801.905 kb on + strand at 801.906 kb on - strand at 801.971 kb on + strand at 801.971 kb on + strand at 801.971 kb on + strand at 801.971 kb on + strand at 801.972 kb on - strand at 802.044 kb on + strand at 802.052 kb on - strand at 802.097 kb on + strand at 802.102 kb on + strand at 802.113 kb on + strand at 802.114 kb on - strand at 802.114 kb on - strand at 802.114 kb on - strand at 802.148 kb on + strand at 802.154 kb on + strand at 802.155 kb on - strand at 802.169 kb on + strand at 802.170 kb on - strand at 802.200 kb on + strand, within BACOVA_05313 at 802.200 kb on + strand, within BACOVA_05313 at 802.202 kb on + strand, within BACOVA_05313 at 802.203 kb on - strand, within BACOVA_05313 at 802.205 kb on + strand, within BACOVA_05313 at 802.205 kb on + strand, within BACOVA_05313 at 802.205 kb on + strand, within BACOVA_05313 at 802.206 kb on - strand, within BACOVA_05313 at 802.206 kb on - strand, within BACOVA_05313 at 802.207 kb on + strand, within BACOVA_05313 at 802.208 kb on - strand, within BACOVA_05313 at 802.212 kb on - strand, within BACOVA_05313 at 802.248 kb on - strand, within BACOVA_05313 at 802.248 kb on - strand, within BACOVA_05313 at 802.275 kb on - strand, within BACOVA_05313 at 802.302 kb on + strand, within BACOVA_05313 at 802.377 kb on + strand, within BACOVA_05313 at 802.390 kb on + strand, within BACOVA_05313 at 802.473 kb on + strand, within BACOVA_05313 at 802.534 kb on - strand, within BACOVA_05313 at 802.544 kb on + strand, within BACOVA_05313 at 802.546 kb on + strand, within BACOVA_05313 at 802.547 kb on - strand, within BACOVA_05313 at 802.555 kb on - strand, within BACOVA_05313 at 802.673 kb on + strand, within BACOVA_05313 at 802.674 kb on - strand, within BACOVA_05313 at 802.691 kb on - strand, within BACOVA_05313 at 802.691 kb on - strand, within BACOVA_05313 at 802.694 kb on + strand, within BACOVA_05313 at 802.760 kb on + strand, within BACOVA_05313 at 802.762 kb on + strand, within BACOVA_05313 at 802.798 kb on - strand, within BACOVA_05313 at 802.821 kb on - strand, within BACOVA_05313 at 802.826 kb on + strand, within BACOVA_05313 at 802.837 kb on - strand, within BACOVA_05313 at 802.841 kb on + strand, within BACOVA_05313 at 802.866 kb on + strand, within BACOVA_05313 at 802.867 kb on - strand, within BACOVA_05313 at 802.872 kb on + strand, within BACOVA_05313 at 802.872 kb on + strand, within BACOVA_05313 at 802.873 kb on - strand, within BACOVA_05313 at 802.954 kb on - strand at 802.966 kb on - strand at 802.968 kb on + strand at 803.028 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 799,626 - BACOVA_05310 0.35 -0.7 799,667 + BACOVA_05310 0.41 -1.2 799,749 - BACOVA_05310 0.54 -1.0 799,770 - BACOVA_05310 0.57 -1.2 799,778 + BACOVA_05310 0.59 +0.3 799,860 - BACOVA_05310 0.72 +0.3 799,862 + BACOVA_05310 0.72 +1.9 799,869 - BACOVA_05310 0.73 -0.3 799,888 + BACOVA_05310 0.76 -0.4 799,953 - BACOVA_05310 0.86 +0.1 800,006 + -0.9 800,006 + +1.3 800,006 + +0.8 800,006 + -1.1 800,006 + -0.0 800,007 - -1.5 800,007 - -0.2 800,007 - +3.1 800,007 - +0.9 800,007 - +0.0 800,007 - +0.7 800,007 - +1.5 800,008 + -0.8 800,018 - -0.9 800,033 - -0.2 800,038 - +0.3 800,278 + BACOVA_05311 0.39 -0.7 800,327 - BACOVA_05311 0.49 -0.4 800,439 + BACOVA_05311 0.70 +0.1 800,440 - BACOVA_05311 0.70 -0.4 800,444 - BACOVA_05311 0.71 -1.5 800,444 - BACOVA_05311 0.71 -1.2 800,459 + BACOVA_05311 0.74 +0.4 800,469 + BACOVA_05311 0.76 -1.5 800,528 - BACOVA_05311 0.87 -0.3 800,528 - BACOVA_05311 0.87 -0.0 800,540 - BACOVA_05311 0.89 -1.7 800,540 - BACOVA_05311 0.89 +0.2 800,550 + -0.9 800,587 + +1.6 800,588 - -0.3 800,597 + -1.8 800,598 - +1.2 800,618 + +0.9 800,618 + +0.3 800,618 + -0.5 800,618 + +0.3 800,619 - +1.2 800,619 - -0.2 800,730 - +1.9 800,762 - BACOVA_05312 0.10 +0.3 800,772 + BACOVA_05312 0.11 +1.9 800,778 + BACOVA_05312 0.11 +1.1 800,779 - BACOVA_05312 0.11 -0.0 800,803 + BACOVA_05312 0.13 +0.3 800,803 + BACOVA_05312 0.13 +1.2 800,804 - BACOVA_05312 0.13 -0.5 800,845 + BACOVA_05312 0.16 +0.8 800,845 + BACOVA_05312 0.16 -0.2 800,938 + BACOVA_05312 0.23 +0.4 800,939 - BACOVA_05312 0.23 +0.3 800,942 + BACOVA_05312 0.23 -0.2 800,976 + BACOVA_05312 0.25 +0.7 801,057 + BACOVA_05312 0.31 -0.9 801,080 + BACOVA_05312 0.33 -1.1 801,099 - BACOVA_05312 0.34 +0.7 801,099 - BACOVA_05312 0.34 +0.3 801,139 - BACOVA_05312 0.37 -1.0 801,147 - BACOVA_05312 0.38 +0.1 801,204 + BACOVA_05312 0.42 +0.9 801,275 + BACOVA_05312 0.47 -0.5 801,275 + BACOVA_05312 0.47 -0.5 801,276 - BACOVA_05312 0.47 +0.2 801,385 - BACOVA_05312 0.54 +0.2 801,385 - BACOVA_05312 0.54 +1.5 801,392 - BACOVA_05312 0.55 -0.1 801,392 - BACOVA_05312 0.55 -0.8 801,406 + BACOVA_05312 0.56 +0.6 801,407 - BACOVA_05312 0.56 +1.3 801,423 + BACOVA_05312 0.57 +0.7 801,423 + BACOVA_05312 0.57 +0.3 801,424 - BACOVA_05312 0.57 +0.7 801,424 - BACOVA_05312 0.57 -2.1 801,462 + BACOVA_05312 0.60 -0.1 801,591 + BACOVA_05312 0.69 -1.5 801,591 + BACOVA_05312 0.69 -0.2 801,592 - BACOVA_05312 0.69 +0.6 801,594 + BACOVA_05312 0.69 +0.9 801,598 + BACOVA_05312 0.69 +1.4 801,689 - BACOVA_05312 0.76 +0.5 801,702 - BACOVA_05312 0.77 -0.0 801,717 + BACOVA_05312 0.78 +0.6 801,738 + BACOVA_05312 0.79 -0.1 801,738 + BACOVA_05312 0.79 -1.1 801,739 - BACOVA_05312 0.79 +0.6 801,850 + BACOVA_05312 0.87 -0.9 801,851 - BACOVA_05312 0.87 -0.2 801,856 + BACOVA_05312 0.88 +0.9 801,856 + BACOVA_05312 0.88 +0.1 801,856 + BACOVA_05312 0.88 -0.1 801,857 - BACOVA_05312 0.88 -1.0 801,858 + BACOVA_05312 0.88 -1.7 801,858 + BACOVA_05312 0.88 +0.4 801,901 - +0.3 801,905 + -0.2 801,906 - +0.2 801,971 + -1.4 801,971 + -0.7 801,971 + +1.9 801,971 + -1.0 801,972 - +1.9 802,044 + -0.5 802,052 - -0.4 802,097 + -0.7 802,102 + -0.3 802,113 + +0.7 802,114 - -1.7 802,114 - +0.7 802,114 - -0.1 802,148 + +0.8 802,154 + +0.6 802,155 - +0.5 802,169 + +1.1 802,170 - -2.1 802,200 + BACOVA_05313 0.11 -1.4 802,200 + BACOVA_05313 0.11 +0.5 802,202 + BACOVA_05313 0.11 -1.0 802,203 - BACOVA_05313 0.12 -1.4 802,205 + BACOVA_05313 0.12 -0.6 802,205 + BACOVA_05313 0.12 +0.9 802,205 + BACOVA_05313 0.12 -1.2 802,206 - BACOVA_05313 0.12 -0.1 802,206 - BACOVA_05313 0.12 -0.1 802,207 + BACOVA_05313 0.12 -1.4 802,208 - BACOVA_05313 0.12 +0.9 802,212 - BACOVA_05313 0.13 -1.1 802,248 - BACOVA_05313 0.17 -0.1 802,248 - BACOVA_05313 0.17 -0.5 802,275 - BACOVA_05313 0.20 -1.0 802,302 + BACOVA_05313 0.23 -1.4 802,377 + BACOVA_05313 0.31 -0.1 802,390 + BACOVA_05313 0.33 -0.3 802,473 + BACOVA_05313 0.42 +1.7 802,534 - BACOVA_05313 0.49 -1.7 802,544 + BACOVA_05313 0.50 +0.2 802,546 + BACOVA_05313 0.50 -0.1 802,547 - BACOVA_05313 0.51 -0.8 802,555 - BACOVA_05313 0.51 -0.8 802,673 + BACOVA_05313 0.65 +0.8 802,674 - BACOVA_05313 0.65 -0.4 802,691 - BACOVA_05313 0.67 -2.9 802,691 - BACOVA_05313 0.67 +0.6 802,694 + BACOVA_05313 0.67 -1.1 802,760 + BACOVA_05313 0.75 -1.0 802,762 + BACOVA_05313 0.75 +1.1 802,798 - BACOVA_05313 0.79 +0.2 802,821 - BACOVA_05313 0.82 +2.7 802,826 + BACOVA_05313 0.82 -2.7 802,837 - BACOVA_05313 0.83 +0.6 802,841 + BACOVA_05313 0.84 +0.9 802,866 + BACOVA_05313 0.87 +0.2 802,867 - BACOVA_05313 0.87 -1.2 802,872 + BACOVA_05313 0.87 -0.9 802,872 + BACOVA_05313 0.87 -0.5 802,873 - BACOVA_05313 0.88 -0.8 802,954 - -0.3 802,966 - +0.5 802,968 + -0.7 803,028 + +0.9
Or see this region's nucleotide sequence