Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05201 and BACOVA_05202 are separated by 99 nucleotides BACOVA_05202 and BACOVA_05203 overlap by 8 nucleotides BACOVA_05203 and BACOVA_05204 are separated by 103 nucleotides
BACOVA_05201: BACOVA_05201 - hypothetical protein, at 700,835 to 702,976
_05201
BACOVA_05202: BACOVA_05202 - hypothetical protein, at 703,076 to 703,195
_05202
BACOVA_05203: BACOVA_05203 - tetratricopeptide repeat protein, at 703,188 to 706,541
_05203
BACOVA_05204: BACOVA_05204 - 23S rRNA m2A2503 methyltransferase, at 706,645 to 707,679
_05204
Position (kb) 703
704
705
706
707 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 702.507 kb on + strand, within BACOVA_05201 at 702.829 kb on - strand at 702.933 kb on - strand at 702.982 kb on + strand at 702.983 kb on - strand at 702.983 kb on - strand at 702.992 kb on + strand at 702.993 kb on - strand at 702.996 kb on + strand at 702.996 kb on + strand at 703.000 kb on - strand at 703.010 kb on + strand at 703.011 kb on - strand at 703.029 kb on + strand at 703.059 kb on + strand at 703.139 kb on + strand, within BACOVA_05202 at 703.140 kb on - strand, within BACOVA_05202 at 703.167 kb on + strand, within BACOVA_05202 at 703.182 kb on + strand, within BACOVA_05202 at 703.183 kb on - strand, within BACOVA_05202 at 703.183 kb on - strand, within BACOVA_05202 at 703.185 kb on - strand at 703.187 kb on - strand at 703.194 kb on - strand at 703.295 kb on - strand at 703.295 kb on - strand at 703.434 kb on - strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.457 kb on + strand at 703.458 kb on - strand at 703.458 kb on - strand at 703.492 kb on - strand at 703.502 kb on - strand at 703.502 kb on - strand at 703.502 kb on - strand at 703.530 kb on + strand, within BACOVA_05203 at 703.541 kb on - strand, within BACOVA_05203 at 703.598 kb on - strand, within BACOVA_05203 at 703.618 kb on + strand, within BACOVA_05203 at 703.627 kb on - strand, within BACOVA_05203 at 703.632 kb on + strand, within BACOVA_05203 at 703.636 kb on + strand, within BACOVA_05203 at 703.743 kb on + strand, within BACOVA_05203 at 703.767 kb on - strand, within BACOVA_05203 at 703.819 kb on + strand, within BACOVA_05203 at 703.835 kb on + strand, within BACOVA_05203 at 703.895 kb on - strand, within BACOVA_05203 at 704.025 kb on - strand, within BACOVA_05203 at 704.039 kb on + strand, within BACOVA_05203 at 704.040 kb on - strand, within BACOVA_05203 at 704.043 kb on + strand, within BACOVA_05203 at 704.043 kb on + strand, within BACOVA_05203 at 704.063 kb on + strand, within BACOVA_05203 at 704.063 kb on + strand, within BACOVA_05203 at 704.064 kb on - strand, within BACOVA_05203 at 704.101 kb on + strand, within BACOVA_05203 at 704.101 kb on + strand, within BACOVA_05203 at 704.102 kb on - strand, within BACOVA_05203 at 704.364 kb on + strand, within BACOVA_05203 at 704.398 kb on - strand, within BACOVA_05203 at 704.442 kb on - strand, within BACOVA_05203 at 704.577 kb on + strand, within BACOVA_05203 at 704.586 kb on - strand, within BACOVA_05203 at 704.590 kb on - strand, within BACOVA_05203 at 704.668 kb on + strand, within BACOVA_05203 at 704.700 kb on + strand, within BACOVA_05203 at 704.718 kb on + strand, within BACOVA_05203 at 704.719 kb on - strand, within BACOVA_05203 at 704.720 kb on + strand, within BACOVA_05203 at 704.721 kb on - strand, within BACOVA_05203 at 704.721 kb on - strand, within BACOVA_05203 at 704.761 kb on - strand, within BACOVA_05203 at 704.852 kb on + strand, within BACOVA_05203 at 704.885 kb on + strand, within BACOVA_05203 at 704.885 kb on + strand, within BACOVA_05203 at 704.977 kb on + strand, within BACOVA_05203 at 704.995 kb on - strand, within BACOVA_05203 at 705.017 kb on + strand, within BACOVA_05203 at 705.017 kb on + strand, within BACOVA_05203 at 705.017 kb on + strand, within BACOVA_05203 at 705.018 kb on - strand, within BACOVA_05203 at 705.019 kb on + strand, within BACOVA_05203 at 705.019 kb on + strand, within BACOVA_05203 at 705.102 kb on - strand, within BACOVA_05203 at 705.106 kb on - strand, within BACOVA_05203 at 705.158 kb on + strand, within BACOVA_05203 at 705.159 kb on - strand, within BACOVA_05203 at 705.159 kb on - strand, within BACOVA_05203 at 705.172 kb on - strand, within BACOVA_05203 at 705.191 kb on + strand, within BACOVA_05203 at 705.191 kb on + strand, within BACOVA_05203 at 705.191 kb on + strand, within BACOVA_05203 at 705.192 kb on - strand, within BACOVA_05203 at 705.194 kb on - strand, within BACOVA_05203 at 705.374 kb on + strand, within BACOVA_05203 at 705.375 kb on - strand, within BACOVA_05203 at 705.631 kb on - strand, within BACOVA_05203 at 705.633 kb on + strand, within BACOVA_05203 at 705.636 kb on + strand, within BACOVA_05203 at 705.637 kb on - strand, within BACOVA_05203 at 705.637 kb on - strand, within BACOVA_05203 at 705.648 kb on + strand, within BACOVA_05203 at 705.648 kb on + strand, within BACOVA_05203 at 705.648 kb on + strand, within BACOVA_05203 at 705.688 kb on - strand, within BACOVA_05203 at 705.744 kb on + strand, within BACOVA_05203 at 705.765 kb on + strand, within BACOVA_05203 at 705.765 kb on + strand, within BACOVA_05203 at 705.766 kb on - strand, within BACOVA_05203 at 705.767 kb on + strand, within BACOVA_05203 at 705.768 kb on - strand, within BACOVA_05203 at 705.892 kb on - strand, within BACOVA_05203 at 705.950 kb on - strand, within BACOVA_05203 at 705.997 kb on - strand, within BACOVA_05203 at 705.999 kb on + strand, within BACOVA_05203 at 705.999 kb on + strand, within BACOVA_05203 at 706.000 kb on - strand, within BACOVA_05203 at 706.000 kb on - strand, within BACOVA_05203 at 706.000 kb on - strand, within BACOVA_05203 at 706.004 kb on - strand, within BACOVA_05203 at 706.060 kb on + strand, within BACOVA_05203 at 706.061 kb on - strand, within BACOVA_05203 at 706.092 kb on + strand, within BACOVA_05203 at 706.092 kb on + strand, within BACOVA_05203 at 706.155 kb on - strand, within BACOVA_05203 at 706.170 kb on + strand, within BACOVA_05203 at 706.171 kb on - strand, within BACOVA_05203 at 706.178 kb on + strand, within BACOVA_05203 at 706.186 kb on - strand, within BACOVA_05203 at 706.242 kb on - strand at 706.258 kb on + strand at 706.259 kb on - strand at 706.260 kb on + strand at 706.260 kb on + strand at 706.281 kb on + strand at 706.282 kb on - strand at 706.300 kb on - strand at 706.350 kb on + strand at 706.351 kb on - strand at 706.374 kb on - strand at 706.458 kb on + strand at 706.459 kb on - strand at 706.518 kb on + strand at 706.518 kb on + strand at 706.518 kb on + strand at 706.520 kb on + strand at 706.551 kb on - strand at 706.551 kb on - strand at 706.573 kb on + strand at 706.601 kb on + strand at 706.623 kb on + strand at 706.623 kb on + strand at 706.710 kb on + strand at 706.710 kb on + strand at 706.779 kb on + strand, within BACOVA_05204 at 706.868 kb on + strand, within BACOVA_05204 at 706.885 kb on + strand, within BACOVA_05204 at 706.893 kb on + strand, within BACOVA_05204 at 706.893 kb on + strand, within BACOVA_05204 at 706.893 kb on + strand, within BACOVA_05204 at 706.927 kb on + strand, within BACOVA_05204 at 707.020 kb on + strand, within BACOVA_05204 at 707.022 kb on + strand, within BACOVA_05204 at 707.022 kb on + strand, within BACOVA_05204 at 707.022 kb on + strand, within BACOVA_05204 at 707.022 kb on + strand, within BACOVA_05204 at 707.051 kb on + strand, within BACOVA_05204 at 707.051 kb on + strand, within BACOVA_05204 at 707.051 kb on + strand, within BACOVA_05204 at 707.091 kb on + strand, within BACOVA_05204 at 707.099 kb on + strand, within BACOVA_05204 at 707.099 kb on + strand, within BACOVA_05204 at 707.099 kb on + strand, within BACOVA_05204 at 707.379 kb on + strand, within BACOVA_05204
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 702,507 + BACOVA_05201 0.78 -0.0 702,829 - +1.0 702,933 - -1.0 702,982 + -0.0 702,983 - -2.0 702,983 - -1.9 702,992 + -1.6 702,993 - -1.4 702,996 + -0.5 702,996 + -0.1 703,000 - -1.9 703,010 + -0.4 703,011 - -0.6 703,029 + +0.5 703,059 + +0.0 703,139 + BACOVA_05202 0.53 +0.1 703,140 - BACOVA_05202 0.53 -2.4 703,167 + BACOVA_05202 0.76 -1.4 703,182 + BACOVA_05202 0.88 -0.5 703,183 - BACOVA_05202 0.89 -1.0 703,183 - BACOVA_05202 0.89 -1.2 703,185 - +1.0 703,187 - +1.0 703,194 - -0.0 703,295 - -0.0 703,295 - -0.8 703,434 - +1.6 703,457 + -0.2 703,457 + +0.5 703,457 + +1.0 703,457 + -1.6 703,457 + +1.4 703,458 - -0.6 703,458 - +1.0 703,492 - -0.8 703,502 - +0.1 703,502 - +0.5 703,502 - -0.5 703,530 + BACOVA_05203 0.10 -0.6 703,541 - BACOVA_05203 0.11 +0.3 703,598 - BACOVA_05203 0.12 -0.8 703,618 + BACOVA_05203 0.13 +0.6 703,627 - BACOVA_05203 0.13 -0.6 703,632 + BACOVA_05203 0.13 +0.4 703,636 + BACOVA_05203 0.13 -2.8 703,743 + BACOVA_05203 0.17 -1.0 703,767 - BACOVA_05203 0.17 +0.8 703,819 + BACOVA_05203 0.19 -1.4 703,835 + BACOVA_05203 0.19 +0.3 703,895 - BACOVA_05203 0.21 +2.1 704,025 - BACOVA_05203 0.25 -1.1 704,039 + BACOVA_05203 0.25 +0.9 704,040 - BACOVA_05203 0.25 -0.6 704,043 + BACOVA_05203 0.25 +1.8 704,043 + BACOVA_05203 0.25 -1.0 704,063 + BACOVA_05203 0.26 -0.5 704,063 + BACOVA_05203 0.26 -0.7 704,064 - BACOVA_05203 0.26 -0.2 704,101 + BACOVA_05203 0.27 -1.0 704,101 + BACOVA_05203 0.27 -1.6 704,102 - BACOVA_05203 0.27 +0.5 704,364 + BACOVA_05203 0.35 -0.6 704,398 - BACOVA_05203 0.36 -0.1 704,442 - BACOVA_05203 0.37 +1.5 704,577 + BACOVA_05203 0.41 +1.0 704,586 - BACOVA_05203 0.42 +0.4 704,590 - BACOVA_05203 0.42 -1.0 704,668 + BACOVA_05203 0.44 +1.3 704,700 + BACOVA_05203 0.45 -1.4 704,718 + BACOVA_05203 0.46 +0.6 704,719 - BACOVA_05203 0.46 +0.2 704,720 + BACOVA_05203 0.46 +0.2 704,721 - BACOVA_05203 0.46 -1.4 704,721 - BACOVA_05203 0.46 +1.4 704,761 - BACOVA_05203 0.47 -0.5 704,852 + BACOVA_05203 0.50 -1.9 704,885 + BACOVA_05203 0.51 +0.2 704,885 + BACOVA_05203 0.51 +0.2 704,977 + BACOVA_05203 0.53 +0.7 704,995 - BACOVA_05203 0.54 +0.4 705,017 + BACOVA_05203 0.55 +0.6 705,017 + BACOVA_05203 0.55 +0.3 705,017 + BACOVA_05203 0.55 +1.5 705,018 - BACOVA_05203 0.55 +0.5 705,019 + BACOVA_05203 0.55 +0.4 705,019 + BACOVA_05203 0.55 -1.0 705,102 - BACOVA_05203 0.57 -0.2 705,106 - BACOVA_05203 0.57 -0.6 705,158 + BACOVA_05203 0.59 +0.4 705,159 - BACOVA_05203 0.59 -0.0 705,159 - BACOVA_05203 0.59 +1.0 705,172 - BACOVA_05203 0.59 +1.0 705,191 + BACOVA_05203 0.60 +3.2 705,191 + BACOVA_05203 0.60 +0.1 705,191 + BACOVA_05203 0.60 +1.1 705,192 - BACOVA_05203 0.60 +0.1 705,194 - BACOVA_05203 0.60 +0.2 705,374 + BACOVA_05203 0.65 -0.2 705,375 - BACOVA_05203 0.65 +1.0 705,631 - BACOVA_05203 0.73 -1.3 705,633 + BACOVA_05203 0.73 +0.8 705,636 + BACOVA_05203 0.73 +1.0 705,637 - BACOVA_05203 0.73 -0.0 705,637 - BACOVA_05203 0.73 +0.5 705,648 + BACOVA_05203 0.73 +1.4 705,648 + BACOVA_05203 0.73 -1.0 705,648 + BACOVA_05203 0.73 +0.6 705,688 - BACOVA_05203 0.75 -0.6 705,744 + BACOVA_05203 0.76 -0.9 705,765 + BACOVA_05203 0.77 -2.2 705,765 + BACOVA_05203 0.77 +1.6 705,766 - BACOVA_05203 0.77 +1.3 705,767 + BACOVA_05203 0.77 -1.9 705,768 - BACOVA_05203 0.77 +2.3 705,892 - BACOVA_05203 0.81 -0.9 705,950 - BACOVA_05203 0.82 +1.5 705,997 - BACOVA_05203 0.84 -2.4 705,999 + BACOVA_05203 0.84 +0.4 705,999 + BACOVA_05203 0.84 -1.2 706,000 - BACOVA_05203 0.84 +0.3 706,000 - BACOVA_05203 0.84 -0.2 706,000 - BACOVA_05203 0.84 +0.3 706,004 - BACOVA_05203 0.84 +0.3 706,060 + BACOVA_05203 0.86 -1.4 706,061 - BACOVA_05203 0.86 -0.6 706,092 + BACOVA_05203 0.87 +0.7 706,092 + BACOVA_05203 0.87 +0.5 706,155 - BACOVA_05203 0.88 -0.2 706,170 + BACOVA_05203 0.89 +0.2 706,171 - BACOVA_05203 0.89 -0.0 706,178 + BACOVA_05203 0.89 -0.3 706,186 - BACOVA_05203 0.89 +1.6 706,242 - +1.5 706,258 + +1.0 706,259 - -1.7 706,260 + +0.1 706,260 + -2.6 706,281 + +0.3 706,282 - -0.8 706,300 - +0.4 706,350 + +1.0 706,351 - +0.1 706,374 - +0.4 706,458 + -0.6 706,459 - +0.0 706,518 + +0.6 706,518 + -0.9 706,518 + -0.0 706,520 + -0.6 706,551 - +2.0 706,551 - -1.6 706,573 + -0.0 706,601 + -0.3 706,623 + -0.5 706,623 + -0.0 706,710 + -1.8 706,710 + +0.5 706,779 + BACOVA_05204 0.13 +1.5 706,868 + BACOVA_05204 0.22 -0.2 706,885 + BACOVA_05204 0.23 -1.1 706,893 + BACOVA_05204 0.24 -0.0 706,893 + BACOVA_05204 0.24 -0.5 706,893 + BACOVA_05204 0.24 -1.0 706,927 + BACOVA_05204 0.27 -1.0 707,020 + BACOVA_05204 0.36 -0.3 707,022 + BACOVA_05204 0.36 -0.4 707,022 + BACOVA_05204 0.36 -1.0 707,022 + BACOVA_05204 0.36 -0.1 707,022 + BACOVA_05204 0.36 +0.2 707,051 + BACOVA_05204 0.39 -1.5 707,051 + BACOVA_05204 0.39 -0.8 707,051 + BACOVA_05204 0.39 -0.9 707,091 + BACOVA_05204 0.43 +0.6 707,099 + BACOVA_05204 0.44 -2.9 707,099 + BACOVA_05204 0.44 -3.1 707,099 + BACOVA_05204 0.44 +1.0 707,379 + BACOVA_05204 0.71 +0.3
Or see this region's nucleotide sequence