Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05129 and BACOVA_05130 are separated by 21 nucleotides BACOVA_05130 and BACOVA_05131 are separated by 8 nucleotides BACOVA_05131 and BACOVA_05132 are separated by 13 nucleotides
BACOVA_05129: BACOVA_05129 - hypothetical protein, at 604,151 to 605,728
_05129
BACOVA_05130: BACOVA_05130 - RNA methyltransferase, RsmE family, at 605,750 to 606,448
_05130
BACOVA_05131: BACOVA_05131 - hypothetical protein, at 606,457 to 607,050
_05131
BACOVA_05132: BACOVA_05132 - nucleoside transporter, at 607,064 to 608,314
_05132
Position (kb) 606
607
608 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 605.504 kb on + strand, within BACOVA_05129 at 605.567 kb on - strand, within BACOVA_05129 at 605.567 kb on - strand, within BACOVA_05129 at 605.586 kb on - strand at 605.698 kb on + strand at 605.698 kb on + strand at 605.698 kb on + strand at 605.699 kb on - strand at 605.702 kb on + strand at 605.702 kb on + strand at 605.702 kb on + strand at 605.703 kb on - strand at 605.703 kb on - strand at 605.703 kb on - strand at 605.708 kb on - strand at 605.722 kb on + strand at 605.723 kb on - strand at 605.742 kb on + strand at 605.742 kb on + strand at 605.742 kb on + strand at 605.743 kb on - strand at 605.743 kb on - strand at 605.894 kb on + strand, within BACOVA_05130 at 605.894 kb on + strand, within BACOVA_05130 at 605.939 kb on + strand, within BACOVA_05130 at 605.940 kb on - strand, within BACOVA_05130 at 605.958 kb on + strand, within BACOVA_05130 at 605.971 kb on + strand, within BACOVA_05130 at 605.986 kb on + strand, within BACOVA_05130 at 606.109 kb on + strand, within BACOVA_05130 at 606.315 kb on + strand, within BACOVA_05130 at 606.338 kb on - strand, within BACOVA_05130 at 606.358 kb on + strand, within BACOVA_05130 at 606.359 kb on - strand, within BACOVA_05130 at 606.363 kb on - strand, within BACOVA_05130 at 606.422 kb on + strand at 606.425 kb on - strand at 606.436 kb on - strand at 606.436 kb on - strand at 606.440 kb on + strand at 606.449 kb on - strand at 606.459 kb on - strand at 606.469 kb on - strand at 606.525 kb on + strand, within BACOVA_05131 at 606.526 kb on - strand, within BACOVA_05131 at 606.529 kb on - strand, within BACOVA_05131 at 606.681 kb on + strand, within BACOVA_05131 at 606.681 kb on + strand, within BACOVA_05131 at 606.748 kb on - strand, within BACOVA_05131 at 606.771 kb on - strand, within BACOVA_05131 at 606.776 kb on + strand, within BACOVA_05131 at 606.820 kb on + strand, within BACOVA_05131 at 606.841 kb on - strand, within BACOVA_05131 at 606.853 kb on + strand, within BACOVA_05131 at 606.902 kb on + strand, within BACOVA_05131 at 606.943 kb on - strand, within BACOVA_05131 at 606.977 kb on - strand, within BACOVA_05131 at 606.981 kb on + strand, within BACOVA_05131 at 607.021 kb on + strand at 607.031 kb on - strand at 607.031 kb on - strand at 607.095 kb on + strand at 607.104 kb on - strand at 607.137 kb on + strand at 607.138 kb on - strand at 607.200 kb on - strand, within BACOVA_05132 at 607.200 kb on - strand, within BACOVA_05132 at 607.233 kb on + strand, within BACOVA_05132 at 607.234 kb on - strand, within BACOVA_05132 at 607.261 kb on + strand, within BACOVA_05132 at 607.270 kb on + strand, within BACOVA_05132 at 607.271 kb on - strand, within BACOVA_05132 at 607.271 kb on - strand, within BACOVA_05132 at 607.334 kb on - strand, within BACOVA_05132 at 607.397 kb on + strand, within BACOVA_05132 at 607.398 kb on - strand, within BACOVA_05132 at 607.456 kb on + strand, within BACOVA_05132 at 607.456 kb on + strand, within BACOVA_05132 at 607.463 kb on + strand, within BACOVA_05132 at 607.464 kb on - strand, within BACOVA_05132 at 607.464 kb on - strand, within BACOVA_05132 at 607.464 kb on - strand, within BACOVA_05132 at 607.506 kb on - strand, within BACOVA_05132 at 607.506 kb on - strand, within BACOVA_05132 at 607.516 kb on + strand, within BACOVA_05132 at 607.517 kb on - strand, within BACOVA_05132 at 607.548 kb on - strand, within BACOVA_05132 at 607.587 kb on + strand, within BACOVA_05132 at 607.629 kb on + strand, within BACOVA_05132 at 607.633 kb on + strand, within BACOVA_05132 at 607.659 kb on - strand, within BACOVA_05132 at 607.759 kb on + strand, within BACOVA_05132 at 607.784 kb on - strand, within BACOVA_05132 at 607.784 kb on - strand, within BACOVA_05132 at 607.802 kb on + strand, within BACOVA_05132 at 607.823 kb on + strand, within BACOVA_05132 at 607.827 kb on + strand, within BACOVA_05132 at 607.827 kb on + strand, within BACOVA_05132 at 607.828 kb on - strand, within BACOVA_05132 at 607.885 kb on + strand, within BACOVA_05132 at 607.945 kb on - strand, within BACOVA_05132 at 607.945 kb on - strand, within BACOVA_05132 at 607.962 kb on + strand, within BACOVA_05132 at 607.963 kb on - strand, within BACOVA_05132 at 607.963 kb on - strand, within BACOVA_05132 at 607.986 kb on - strand, within BACOVA_05132 at 607.996 kb on + strand, within BACOVA_05132 at 607.996 kb on + strand, within BACOVA_05132 at 607.996 kb on + strand, within BACOVA_05132 at 607.997 kb on - strand, within BACOVA_05132 at 607.997 kb on - strand, within BACOVA_05132 at 607.997 kb on - strand, within BACOVA_05132 at 607.997 kb on - strand, within BACOVA_05132 at 607.997 kb on - strand, within BACOVA_05132 at 607.997 kb on - strand, within BACOVA_05132 at 607.997 kb on - strand, within BACOVA_05132 at 607.998 kb on + strand, within BACOVA_05132 at 607.998 kb on + strand, within BACOVA_05132 at 607.998 kb on + strand, within BACOVA_05132 at 607.999 kb on - strand, within BACOVA_05132 at 607.999 kb on - strand, within BACOVA_05132 at 607.999 kb on - strand, within BACOVA_05132 at 608.015 kb on + strand, within BACOVA_05132 at 608.015 kb on + strand, within BACOVA_05132 at 608.028 kb on + strand, within BACOVA_05132 at 608.029 kb on - strand, within BACOVA_05132
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 605,504 + BACOVA_05129 0.86 -1.1 605,567 - BACOVA_05129 0.90 +0.1 605,567 - BACOVA_05129 0.90 -1.0 605,586 - -1.8 605,698 + +0.9 605,698 + -2.1 605,698 + +0.3 605,699 - +1.4 605,702 + -2.2 605,702 + -0.5 605,702 + -0.7 605,703 - -1.8 605,703 - -1.2 605,703 - +0.9 605,708 - -1.1 605,722 + -0.0 605,723 - +0.6 605,742 + -0.1 605,742 + -3.2 605,742 + +0.4 605,743 - -1.9 605,743 - +0.9 605,894 + BACOVA_05130 0.21 -1.4 605,894 + BACOVA_05130 0.21 -0.6 605,939 + BACOVA_05130 0.27 -0.4 605,940 - BACOVA_05130 0.27 -0.4 605,958 + BACOVA_05130 0.30 +0.3 605,971 + BACOVA_05130 0.32 -0.5 605,986 + BACOVA_05130 0.34 -2.7 606,109 + BACOVA_05130 0.51 -1.9 606,315 + BACOVA_05130 0.81 -1.1 606,338 - BACOVA_05130 0.84 -1.1 606,358 + BACOVA_05130 0.87 -0.6 606,359 - BACOVA_05130 0.87 -0.6 606,363 - BACOVA_05130 0.88 -0.1 606,422 + -0.1 606,425 - -0.4 606,436 - -1.0 606,436 - -0.9 606,440 + +1.2 606,449 - +0.8 606,459 - +0.3 606,469 - +0.3 606,525 + BACOVA_05131 0.11 -0.2 606,526 - BACOVA_05131 0.12 +0.3 606,529 - BACOVA_05131 0.12 -0.5 606,681 + BACOVA_05131 0.38 +0.1 606,681 + BACOVA_05131 0.38 -1.7 606,748 - BACOVA_05131 0.49 -2.2 606,771 - BACOVA_05131 0.53 -0.7 606,776 + BACOVA_05131 0.54 +0.7 606,820 + BACOVA_05131 0.61 +1.2 606,841 - BACOVA_05131 0.65 +0.9 606,853 + BACOVA_05131 0.67 -1.3 606,902 + BACOVA_05131 0.75 -1.2 606,943 - BACOVA_05131 0.82 -1.4 606,977 - BACOVA_05131 0.88 +0.3 606,981 + BACOVA_05131 0.88 -1.7 607,021 + +1.0 607,031 - -0.4 607,031 - -1.3 607,095 + -5.9 607,104 - -4.1 607,137 + -5.8 607,138 - -4.9 607,200 - BACOVA_05132 0.11 -3.2 607,200 - BACOVA_05132 0.11 -2.7 607,233 + BACOVA_05132 0.14 -5.6 607,234 - BACOVA_05132 0.14 -4.1 607,261 + BACOVA_05132 0.16 -4.6 607,270 + BACOVA_05132 0.16 -5.7 607,271 - BACOVA_05132 0.17 -5.9 607,271 - BACOVA_05132 0.17 -5.2 607,334 - BACOVA_05132 0.22 -4.2 607,397 + BACOVA_05132 0.27 -7.2 607,398 - BACOVA_05132 0.27 -5.3 607,456 + BACOVA_05132 0.31 -6.4 607,456 + BACOVA_05132 0.31 -4.7 607,463 + BACOVA_05132 0.32 -6.6 607,464 - BACOVA_05132 0.32 -4.9 607,464 - BACOVA_05132 0.32 -4.1 607,464 - BACOVA_05132 0.32 -6.1 607,506 - BACOVA_05132 0.35 -4.3 607,506 - BACOVA_05132 0.35 -5.5 607,516 + BACOVA_05132 0.36 -5.8 607,517 - BACOVA_05132 0.36 -4.2 607,548 - BACOVA_05132 0.39 -7.7 607,587 + BACOVA_05132 0.42 -6.5 607,629 + BACOVA_05132 0.45 -6.3 607,633 + BACOVA_05132 0.45 -4.6 607,659 - BACOVA_05132 0.48 -5.9 607,759 + BACOVA_05132 0.56 -3.4 607,784 - BACOVA_05132 0.58 -4.6 607,784 - BACOVA_05132 0.58 -2.2 607,802 + BACOVA_05132 0.59 -4.9 607,823 + BACOVA_05132 0.61 -4.5 607,827 + BACOVA_05132 0.61 -4.5 607,827 + BACOVA_05132 0.61 -5.7 607,828 - BACOVA_05132 0.61 -3.2 607,885 + BACOVA_05132 0.66 -3.9 607,945 - BACOVA_05132 0.70 -5.0 607,945 - BACOVA_05132 0.70 -4.6 607,962 + BACOVA_05132 0.72 -1.4 607,963 - BACOVA_05132 0.72 -5.0 607,963 - BACOVA_05132 0.72 -5.5 607,986 - BACOVA_05132 0.74 -5.7 607,996 + BACOVA_05132 0.75 -3.8 607,996 + BACOVA_05132 0.75 -2.5 607,996 + BACOVA_05132 0.75 -5.2 607,997 - BACOVA_05132 0.75 -5.0 607,997 - BACOVA_05132 0.75 -4.1 607,997 - BACOVA_05132 0.75 -4.0 607,997 - BACOVA_05132 0.75 -2.2 607,997 - BACOVA_05132 0.75 -5.2 607,997 - BACOVA_05132 0.75 -5.6 607,997 - BACOVA_05132 0.75 -6.3 607,998 + BACOVA_05132 0.75 -8.0 607,998 + BACOVA_05132 0.75 -7.0 607,998 + BACOVA_05132 0.75 -4.8 607,999 - BACOVA_05132 0.75 -5.5 607,999 - BACOVA_05132 0.75 -6.0 607,999 - BACOVA_05132 0.75 -4.6 608,015 + BACOVA_05132 0.76 -5.0 608,015 + BACOVA_05132 0.76 -5.7 608,028 + BACOVA_05132 0.77 -7.5 608,029 - BACOVA_05132 0.77 -5.3
Or see this region's nucleotide sequence