Experiment: Peptone 2.5 mg/mL (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04791 and BACOVA_04792 are separated by 144 nucleotides BACOVA_04792 and BACOVA_04793 overlap by 11 nucleotides
BACOVA_04791: BACOVA_04791 - Eco57I restriction endonuclease, at 141,688 to 144,387
_04791
BACOVA_04792: BACOVA_04792 - hypothetical protein, at 144,532 to 145,797
_04792
BACOVA_04793: BACOVA_04793 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 145,787 to 148,090
_04793
Position (kb) 144
145
146 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 143.600 kb on + strand, within BACOVA_04791 at 143.601 kb on - strand, within BACOVA_04791 at 143.601 kb on - strand, within BACOVA_04791 at 143.636 kb on + strand, within BACOVA_04791 at 143.636 kb on + strand, within BACOVA_04791 at 143.637 kb on - strand, within BACOVA_04791 at 143.677 kb on + strand, within BACOVA_04791 at 143.678 kb on - strand, within BACOVA_04791 at 143.683 kb on + strand, within BACOVA_04791 at 143.688 kb on + strand, within BACOVA_04791 at 143.721 kb on + strand, within BACOVA_04791 at 143.739 kb on - strand, within BACOVA_04791 at 143.739 kb on - strand, within BACOVA_04791 at 143.791 kb on - strand, within BACOVA_04791 at 143.795 kb on + strand, within BACOVA_04791 at 143.796 kb on - strand, within BACOVA_04791 at 143.801 kb on - strand, within BACOVA_04791 at 143.822 kb on + strand, within BACOVA_04791 at 143.832 kb on + strand, within BACOVA_04791 at 143.833 kb on - strand, within BACOVA_04791 at 143.874 kb on + strand, within BACOVA_04791 at 143.874 kb on + strand, within BACOVA_04791 at 143.874 kb on + strand, within BACOVA_04791 at 143.874 kb on + strand, within BACOVA_04791 at 143.874 kb on + strand, within BACOVA_04791 at 143.875 kb on - strand, within BACOVA_04791 at 143.875 kb on - strand, within BACOVA_04791 at 143.875 kb on - strand, within BACOVA_04791 at 143.875 kb on - strand, within BACOVA_04791 at 143.875 kb on - strand, within BACOVA_04791 at 143.885 kb on + strand, within BACOVA_04791 at 143.886 kb on - strand, within BACOVA_04791 at 143.890 kb on + strand, within BACOVA_04791 at 143.909 kb on - strand, within BACOVA_04791 at 143.964 kb on + strand, within BACOVA_04791 at 143.977 kb on + strand, within BACOVA_04791 at 143.978 kb on - strand, within BACOVA_04791 at 143.981 kb on + strand, within BACOVA_04791 at 143.988 kb on + strand, within BACOVA_04791 at 143.988 kb on + strand, within BACOVA_04791 at 143.989 kb on - strand, within BACOVA_04791 at 143.997 kb on + strand, within BACOVA_04791 at 143.997 kb on + strand, within BACOVA_04791 at 143.998 kb on - strand, within BACOVA_04791 at 144.021 kb on - strand, within BACOVA_04791 at 144.073 kb on - strand, within BACOVA_04791 at 144.096 kb on + strand, within BACOVA_04791 at 144.097 kb on - strand, within BACOVA_04791 at 144.125 kb on + strand at 144.176 kb on - strand at 144.236 kb on + strand at 144.236 kb on + strand at 144.237 kb on - strand at 144.237 kb on - strand at 144.237 kb on - strand at 144.240 kb on + strand at 144.257 kb on + strand at 144.258 kb on - strand at 144.282 kb on + strand at 144.292 kb on + strand at 144.294 kb on + strand at 144.294 kb on + strand at 144.295 kb on - strand at 144.300 kb on + strand at 144.301 kb on - strand at 144.303 kb on + strand at 144.304 kb on - strand at 144.305 kb on + strand at 144.358 kb on - strand at 144.359 kb on + strand at 144.360 kb on - strand at 144.388 kb on + strand at 144.389 kb on - strand at 144.389 kb on - strand at 144.389 kb on - strand at 144.417 kb on - strand at 144.417 kb on - strand at 144.420 kb on + strand at 144.421 kb on - strand at 144.423 kb on + strand at 144.424 kb on - strand at 144.460 kb on + strand at 144.461 kb on - strand at 144.470 kb on + strand at 144.470 kb on + strand at 144.477 kb on - strand at 144.480 kb on + strand at 144.485 kb on + strand at 144.521 kb on - strand at 144.525 kb on + strand at 144.526 kb on - strand at 144.534 kb on - strand at 144.546 kb on + strand at 144.547 kb on - strand at 144.562 kb on + strand at 144.562 kb on + strand at 144.563 kb on - strand at 144.563 kb on - strand at 144.564 kb on + strand at 144.587 kb on - strand at 144.625 kb on + strand at 144.625 kb on + strand at 144.625 kb on + strand at 144.625 kb on + strand at 144.625 kb on + strand at 144.625 kb on + strand at 144.626 kb on - strand at 144.626 kb on - strand at 144.626 kb on - strand at 144.626 kb on - strand at 144.629 kb on + strand at 144.629 kb on + strand at 144.629 kb on + strand at 144.629 kb on + strand at 144.629 kb on + strand at 144.630 kb on - strand at 144.630 kb on - strand at 144.630 kb on - strand at 144.631 kb on + strand at 144.649 kb on + strand at 144.649 kb on + strand at 144.651 kb on + strand at 144.651 kb on + strand at 144.652 kb on - strand at 144.652 kb on - strand at 144.658 kb on + strand at 144.658 kb on + strand at 144.707 kb on + strand, within BACOVA_04792 at 144.757 kb on + strand, within BACOVA_04792 at 144.770 kb on - strand, within BACOVA_04792 at 144.783 kb on + strand, within BACOVA_04792 at 144.807 kb on - strand, within BACOVA_04792 at 144.807 kb on - strand, within BACOVA_04792 at 144.810 kb on + strand, within BACOVA_04792 at 144.810 kb on + strand, within BACOVA_04792 at 144.810 kb on + strand, within BACOVA_04792 at 144.810 kb on + strand, within BACOVA_04792 at 144.895 kb on - strand, within BACOVA_04792 at 144.918 kb on + strand, within BACOVA_04792 at 144.918 kb on + strand, within BACOVA_04792 at 144.967 kb on + strand, within BACOVA_04792 at 144.967 kb on + strand, within BACOVA_04792 at 144.968 kb on - strand, within BACOVA_04792 at 144.990 kb on + strand, within BACOVA_04792 at 144.992 kb on + strand, within BACOVA_04792 at 145.008 kb on + strand, within BACOVA_04792 at 145.009 kb on - strand, within BACOVA_04792 at 145.074 kb on + strand, within BACOVA_04792 at 145.085 kb on - strand, within BACOVA_04792 at 145.123 kb on + strand, within BACOVA_04792 at 145.123 kb on + strand, within BACOVA_04792 at 145.124 kb on - strand, within BACOVA_04792 at 145.124 kb on - strand, within BACOVA_04792 at 145.147 kb on - strand, within BACOVA_04792 at 145.300 kb on + strand, within BACOVA_04792 at 145.301 kb on - strand, within BACOVA_04792 at 145.304 kb on + strand, within BACOVA_04792 at 145.304 kb on + strand, within BACOVA_04792 at 145.304 kb on + strand, within BACOVA_04792 at 145.304 kb on + strand, within BACOVA_04792 at 145.305 kb on - strand, within BACOVA_04792 at 145.305 kb on - strand, within BACOVA_04792 at 145.306 kb on + strand, within BACOVA_04792 at 145.306 kb on + strand, within BACOVA_04792 at 145.306 kb on + strand, within BACOVA_04792 at 145.306 kb on + strand, within BACOVA_04792 at 145.306 kb on + strand, within BACOVA_04792 at 145.307 kb on - strand, within BACOVA_04792 at 145.307 kb on - strand, within BACOVA_04792 at 145.307 kb on - strand, within BACOVA_04792 at 145.308 kb on + strand, within BACOVA_04792 at 145.308 kb on + strand, within BACOVA_04792 at 145.308 kb on + strand, within BACOVA_04792 at 145.308 kb on + strand, within BACOVA_04792 at 145.309 kb on - strand, within BACOVA_04792 at 145.309 kb on - strand, within BACOVA_04792 at 145.309 kb on - strand, within BACOVA_04792 at 145.325 kb on - strand, within BACOVA_04792 at 145.355 kb on - strand, within BACOVA_04792 at 145.368 kb on + strand, within BACOVA_04792 at 145.374 kb on + strand, within BACOVA_04792 at 145.403 kb on - strand, within BACOVA_04792 at 145.405 kb on - strand, within BACOVA_04792 at 145.405 kb on - strand, within BACOVA_04792 at 145.408 kb on - strand, within BACOVA_04792 at 145.408 kb on - strand, within BACOVA_04792 at 145.417 kb on + strand, within BACOVA_04792 at 145.418 kb on - strand, within BACOVA_04792 at 145.426 kb on - strand, within BACOVA_04792 at 145.445 kb on - strand, within BACOVA_04792 at 145.454 kb on - strand, within BACOVA_04792 at 145.454 kb on - strand, within BACOVA_04792 at 145.462 kb on - strand, within BACOVA_04792 at 145.462 kb on - strand, within BACOVA_04792 at 145.462 kb on - strand, within BACOVA_04792 at 145.465 kb on - strand, within BACOVA_04792 at 145.465 kb on - strand, within BACOVA_04792 at 145.465 kb on - strand, within BACOVA_04792 at 145.473 kb on + strand, within BACOVA_04792 at 145.473 kb on + strand, within BACOVA_04792 at 145.487 kb on + strand, within BACOVA_04792 at 145.488 kb on - strand, within BACOVA_04792 at 145.510 kb on + strand, within BACOVA_04792 at 145.511 kb on - strand, within BACOVA_04792 at 145.546 kb on + strand, within BACOVA_04792 at 145.565 kb on - strand, within BACOVA_04792 at 145.566 kb on + strand, within BACOVA_04792 at 145.566 kb on + strand, within BACOVA_04792 at 145.566 kb on + strand, within BACOVA_04792 at 145.567 kb on - strand, within BACOVA_04792 at 145.588 kb on + strand, within BACOVA_04792 at 145.590 kb on + strand, within BACOVA_04792 at 145.591 kb on - strand, within BACOVA_04792 at 145.594 kb on - strand, within BACOVA_04792 at 145.636 kb on - strand, within BACOVA_04792 at 145.648 kb on + strand, within BACOVA_04792 at 145.667 kb on + strand, within BACOVA_04792 at 145.668 kb on - strand, within BACOVA_04792 at 145.710 kb on + strand at 145.731 kb on + strand at 145.731 kb on + strand at 145.742 kb on + strand at 145.743 kb on - strand at 145.743 kb on - strand at 145.745 kb on - strand at 145.792 kb on - strand at 145.798 kb on + strand at 145.831 kb on + strand at 145.888 kb on + strand at 145.914 kb on + strand at 145.922 kb on + strand at 145.978 kb on + strand at 146.075 kb on + strand, within BACOVA_04793 at 146.082 kb on + strand, within BACOVA_04793 at 146.086 kb on + strand, within BACOVA_04793 at 146.117 kb on + strand, within BACOVA_04793 at 146.117 kb on + strand, within BACOVA_04793 at 146.164 kb on + strand, within BACOVA_04793 at 146.168 kb on + strand, within BACOVA_04793 at 146.208 kb on + strand, within BACOVA_04793 at 146.208 kb on + strand, within BACOVA_04793 at 146.212 kb on + strand, within BACOVA_04793 at 146.228 kb on + strand, within BACOVA_04793 at 146.275 kb on + strand, within BACOVA_04793 at 146.275 kb on + strand, within BACOVA_04793 at 146.351 kb on + strand, within BACOVA_04793 at 146.435 kb on + strand, within BACOVA_04793 at 146.456 kb on + strand, within BACOVA_04793 at 146.464 kb on + strand, within BACOVA_04793 at 146.477 kb on + strand, within BACOVA_04793 at 146.529 kb on + strand, within BACOVA_04793 at 146.612 kb on + strand, within BACOVA_04793 at 146.612 kb on + strand, within BACOVA_04793 at 146.667 kb on + strand, within BACOVA_04793 at 146.694 kb on + strand, within BACOVA_04793 at 146.714 kb on + strand, within BACOVA_04793
Per-strain Table
Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media remove 143,600 + BACOVA_04791 0.71 -0.7 143,601 - BACOVA_04791 0.71 -1.2 143,601 - BACOVA_04791 0.71 +0.2 143,636 + BACOVA_04791 0.72 -1.5 143,636 + BACOVA_04791 0.72 -0.0 143,637 - BACOVA_04791 0.72 -0.1 143,677 + BACOVA_04791 0.74 +0.5 143,678 - BACOVA_04791 0.74 +0.2 143,683 + BACOVA_04791 0.74 +0.9 143,688 + BACOVA_04791 0.74 -0.5 143,721 + BACOVA_04791 0.75 -1.0 143,739 - BACOVA_04791 0.76 -0.5 143,739 - BACOVA_04791 0.76 -1.2 143,791 - BACOVA_04791 0.78 -1.7 143,795 + BACOVA_04791 0.78 -1.1 143,796 - BACOVA_04791 0.78 +0.1 143,801 - BACOVA_04791 0.78 +0.4 143,822 + BACOVA_04791 0.79 +0.9 143,832 + BACOVA_04791 0.79 -1.4 143,833 - BACOVA_04791 0.79 +0.7 143,874 + BACOVA_04791 0.81 +1.0 143,874 + BACOVA_04791 0.81 +0.6 143,874 + BACOVA_04791 0.81 +0.4 143,874 + BACOVA_04791 0.81 -0.7 143,874 + BACOVA_04791 0.81 -0.1 143,875 - BACOVA_04791 0.81 +0.2 143,875 - BACOVA_04791 0.81 +0.9 143,875 - BACOVA_04791 0.81 +1.8 143,875 - BACOVA_04791 0.81 +0.8 143,875 - BACOVA_04791 0.81 +0.7 143,885 + BACOVA_04791 0.81 +0.4 143,886 - BACOVA_04791 0.81 -0.5 143,890 + BACOVA_04791 0.82 +0.3 143,909 - BACOVA_04791 0.82 +0.6 143,964 + BACOVA_04791 0.84 -0.2 143,977 + BACOVA_04791 0.85 -0.8 143,978 - BACOVA_04791 0.85 -1.4 143,981 + BACOVA_04791 0.85 +1.2 143,988 + BACOVA_04791 0.85 -1.3 143,988 + BACOVA_04791 0.85 -1.0 143,989 - BACOVA_04791 0.85 -3.7 143,997 + BACOVA_04791 0.86 -0.5 143,997 + BACOVA_04791 0.86 +0.1 143,998 - BACOVA_04791 0.86 +0.0 144,021 - BACOVA_04791 0.86 -0.7 144,073 - BACOVA_04791 0.88 +0.9 144,096 + BACOVA_04791 0.89 +0.0 144,097 - BACOVA_04791 0.89 -0.2 144,125 + +0.1 144,176 - -0.3 144,236 + +0.1 144,236 + -1.1 144,237 - +1.9 144,237 - +1.9 144,237 - +1.7 144,240 + -1.7 144,257 + -0.5 144,258 - -0.1 144,282 + -0.7 144,292 + -1.3 144,294 + -2.1 144,294 + +0.7 144,295 - -0.1 144,300 + +0.4 144,301 - -1.2 144,303 + -0.3 144,304 - +1.2 144,305 + +0.4 144,358 - -0.7 144,359 + +0.2 144,360 - -0.5 144,388 + +0.0 144,389 - -2.8 144,389 - +0.1 144,389 - +0.2 144,417 - +1.6 144,417 - -0.4 144,420 + +1.9 144,421 - +0.2 144,423 + +0.3 144,424 - +0.8 144,460 + +1.0 144,461 - -0.7 144,470 + -0.7 144,470 + -2.0 144,477 - +0.2 144,480 + -0.1 144,485 + -0.9 144,521 - -1.7 144,525 + +0.4 144,526 - -1.7 144,534 - +1.4 144,546 + +0.9 144,547 - -0.1 144,562 + +0.8 144,562 + +0.5 144,563 - -1.5 144,563 - +0.2 144,564 + -0.8 144,587 - -0.1 144,625 + +1.9 144,625 + +0.9 144,625 + -0.3 144,625 + -0.5 144,625 + -0.1 144,625 + +0.5 144,626 - +0.0 144,626 - -0.5 144,626 - -0.9 144,626 - -2.8 144,629 + -0.0 144,629 + -0.0 144,629 + +0.8 144,629 + -0.1 144,629 + -0.1 144,630 - -0.3 144,630 - -0.9 144,630 - -1.4 144,631 + -0.5 144,649 + -2.7 144,649 + +0.3 144,651 + +1.2 144,651 + +0.1 144,652 - +0.3 144,652 - +1.3 144,658 + +0.9 144,658 + -0.9 144,707 + BACOVA_04792 0.14 -0.7 144,757 + BACOVA_04792 0.18 -1.1 144,770 - BACOVA_04792 0.19 -0.7 144,783 + BACOVA_04792 0.20 -2.0 144,807 - BACOVA_04792 0.22 +0.1 144,807 - BACOVA_04792 0.22 +0.1 144,810 + BACOVA_04792 0.22 +2.5 144,810 + BACOVA_04792 0.22 -0.6 144,810 + BACOVA_04792 0.22 -0.8 144,810 + BACOVA_04792 0.22 -0.1 144,895 - BACOVA_04792 0.29 -0.8 144,918 + BACOVA_04792 0.30 +0.7 144,918 + BACOVA_04792 0.30 +0.0 144,967 + BACOVA_04792 0.34 +1.0 144,967 + BACOVA_04792 0.34 +0.3 144,968 - BACOVA_04792 0.34 -0.6 144,990 + BACOVA_04792 0.36 +2.2 144,992 + BACOVA_04792 0.36 +0.9 145,008 + BACOVA_04792 0.38 -0.1 145,009 - BACOVA_04792 0.38 +0.0 145,074 + BACOVA_04792 0.43 +0.6 145,085 - BACOVA_04792 0.44 -0.3 145,123 + BACOVA_04792 0.47 -0.1 145,123 + BACOVA_04792 0.47 -0.8 145,124 - BACOVA_04792 0.47 +0.2 145,124 - BACOVA_04792 0.47 -1.7 145,147 - BACOVA_04792 0.49 +1.2 145,300 + BACOVA_04792 0.61 +0.3 145,301 - BACOVA_04792 0.61 -0.8 145,304 + BACOVA_04792 0.61 +0.7 145,304 + BACOVA_04792 0.61 -0.6 145,304 + BACOVA_04792 0.61 -0.5 145,304 + BACOVA_04792 0.61 +0.3 145,305 - BACOVA_04792 0.61 +0.3 145,305 - BACOVA_04792 0.61 +0.9 145,306 + BACOVA_04792 0.61 +2.5 145,306 + BACOVA_04792 0.61 -0.9 145,306 + BACOVA_04792 0.61 +0.4 145,306 + BACOVA_04792 0.61 -0.5 145,306 + BACOVA_04792 0.61 -0.0 145,307 - BACOVA_04792 0.61 -0.1 145,307 - BACOVA_04792 0.61 -0.2 145,307 - BACOVA_04792 0.61 -0.7 145,308 + BACOVA_04792 0.61 -0.0 145,308 + BACOVA_04792 0.61 +0.9 145,308 + BACOVA_04792 0.61 -1.2 145,308 + BACOVA_04792 0.61 +0.2 145,309 - BACOVA_04792 0.61 +0.0 145,309 - BACOVA_04792 0.61 -1.3 145,309 - BACOVA_04792 0.61 -0.9 145,325 - BACOVA_04792 0.63 -0.6 145,355 - BACOVA_04792 0.65 -0.6 145,368 + BACOVA_04792 0.66 -0.0 145,374 + BACOVA_04792 0.67 +0.9 145,403 - BACOVA_04792 0.69 +0.2 145,405 - BACOVA_04792 0.69 +0.1 145,405 - BACOVA_04792 0.69 +0.3 145,408 - BACOVA_04792 0.69 -0.1 145,408 - BACOVA_04792 0.69 -1.1 145,417 + BACOVA_04792 0.70 +0.1 145,418 - BACOVA_04792 0.70 -1.4 145,426 - BACOVA_04792 0.71 -0.8 145,445 - BACOVA_04792 0.72 +1.2 145,454 - BACOVA_04792 0.73 +1.0 145,454 - BACOVA_04792 0.73 +0.5 145,462 - BACOVA_04792 0.73 +0.7 145,462 - BACOVA_04792 0.73 +0.5 145,462 - BACOVA_04792 0.73 -0.3 145,465 - BACOVA_04792 0.74 -0.8 145,465 - BACOVA_04792 0.74 -1.0 145,465 - BACOVA_04792 0.74 -1.2 145,473 + BACOVA_04792 0.74 +0.7 145,473 + BACOVA_04792 0.74 +0.6 145,487 + BACOVA_04792 0.75 +0.8 145,488 - BACOVA_04792 0.76 -0.6 145,510 + BACOVA_04792 0.77 -0.3 145,511 - BACOVA_04792 0.77 +0.3 145,546 + BACOVA_04792 0.80 -0.4 145,565 - BACOVA_04792 0.82 -0.0 145,566 + BACOVA_04792 0.82 -0.1 145,566 + BACOVA_04792 0.82 -0.7 145,566 + BACOVA_04792 0.82 +0.9 145,567 - BACOVA_04792 0.82 +0.0 145,588 + BACOVA_04792 0.83 -0.3 145,590 + BACOVA_04792 0.84 -0.2 145,591 - BACOVA_04792 0.84 -2.4 145,594 - BACOVA_04792 0.84 +1.0 145,636 - BACOVA_04792 0.87 +0.2 145,648 + BACOVA_04792 0.88 -2.4 145,667 + BACOVA_04792 0.90 -0.5 145,668 - BACOVA_04792 0.90 -1.1 145,710 + +0.7 145,731 + -0.4 145,731 + -2.2 145,742 + +1.1 145,743 - -0.2 145,743 - -1.4 145,745 - +0.7 145,792 - -3.6 145,798 + +0.9 145,831 + +0.1 145,888 + +0.9 145,914 + +0.1 145,922 + -0.7 145,978 + -0.7 146,075 + BACOVA_04793 0.12 +0.4 146,082 + BACOVA_04793 0.13 -0.7 146,086 + BACOVA_04793 0.13 -0.9 146,117 + BACOVA_04793 0.14 +1.5 146,117 + BACOVA_04793 0.14 -1.0 146,164 + BACOVA_04793 0.16 +1.3 146,168 + BACOVA_04793 0.17 +0.4 146,208 + BACOVA_04793 0.18 -0.1 146,208 + BACOVA_04793 0.18 +0.1 146,212 + BACOVA_04793 0.18 +0.3 146,228 + BACOVA_04793 0.19 -0.4 146,275 + BACOVA_04793 0.21 +0.9 146,275 + BACOVA_04793 0.21 -0.3 146,351 + BACOVA_04793 0.24 +0.7 146,435 + BACOVA_04793 0.28 +1.7 146,456 + BACOVA_04793 0.29 -0.6 146,464 + BACOVA_04793 0.29 +0.8 146,477 + BACOVA_04793 0.30 -0.5 146,529 + BACOVA_04793 0.32 -0.9 146,612 + BACOVA_04793 0.36 +0.3 146,612 + BACOVA_04793 0.36 -2.3 146,667 + BACOVA_04793 0.38 -0.3 146,694 + BACOVA_04793 0.39 -0.0 146,714 + BACOVA_04793 0.40 -0.0
Or see this region's nucleotide sequence