Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04356

Experiment: Peptone 2.5 mg/mL (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04355 and BACOVA_04356 are separated by 295 nucleotidesBACOVA_04356 and BACOVA_04357 are separated by 40 nucleotides BACOVA_04355: BACOVA_04355 - endonuclease/exonuclease/phosphatase family protein, at 242,079 to 243,278 _04355 BACOVA_04356: BACOVA_04356 - transporter, small conductance mechanosensitive ion channel MscS family protein, at 243,574 to 244,851 _04356 BACOVA_04357: BACOVA_04357 - F5/8 type C domain protein, at 244,892 to 246,709 _04357 Position (kb) 243 244 245Strain fitness (log2 ratio) -2 -1 0 1 2at 242.686 kb on + strand, within BACOVA_04355at 242.699 kb on + strand, within BACOVA_04355at 242.700 kb on - strand, within BACOVA_04355at 242.711 kb on - strand, within BACOVA_04355at 242.764 kb on - strand, within BACOVA_04355at 242.770 kb on + strand, within BACOVA_04355at 242.770 kb on + strand, within BACOVA_04355at 242.772 kb on + strand, within BACOVA_04355at 242.772 kb on + strand, within BACOVA_04355at 242.773 kb on - strand, within BACOVA_04355at 242.773 kb on - strand, within BACOVA_04355at 242.786 kb on - strand, within BACOVA_04355at 242.817 kb on - strand, within BACOVA_04355at 242.929 kb on + strand, within BACOVA_04355at 242.967 kb on - strand, within BACOVA_04355at 242.986 kb on + strand, within BACOVA_04355at 242.987 kb on - strand, within BACOVA_04355at 242.987 kb on - strand, within BACOVA_04355at 242.988 kb on + strand, within BACOVA_04355at 242.996 kb on - strand, within BACOVA_04355at 243.091 kb on + strand, within BACOVA_04355at 243.091 kb on + strand, within BACOVA_04355at 243.091 kb on + strand, within BACOVA_04355at 243.092 kb on - strand, within BACOVA_04355at 243.116 kb on + strand, within BACOVA_04355at 243.216 kb on + strandat 243.217 kb on - strandat 243.249 kb on + strandat 243.272 kb on - strandat 243.274 kb on - strandat 243.276 kb on + strandat 243.277 kb on - strandat 243.277 kb on - strandat 243.280 kb on + strandat 243.281 kb on - strandat 243.281 kb on - strandat 243.292 kb on + strandat 243.295 kb on + strandat 243.295 kb on + strandat 243.306 kb on - strandat 243.316 kb on + strandat 243.323 kb on - strandat 243.327 kb on - strandat 243.329 kb on - strandat 243.363 kb on - strandat 243.394 kb on + strandat 243.409 kb on + strandat 243.409 kb on + strandat 243.440 kb on + strandat 243.462 kb on + strandat 243.482 kb on + strandat 243.483 kb on - strandat 243.485 kb on - strandat 243.485 kb on - strandat 243.498 kb on - strandat 243.498 kb on - strandat 243.511 kb on - strandat 243.515 kb on + strandat 243.556 kb on + strandat 243.575 kb on + strandat 243.575 kb on + strandat 243.660 kb on - strandat 243.676 kb on - strandat 243.703 kb on - strand, within BACOVA_04356at 243.703 kb on - strand, within BACOVA_04356at 243.706 kb on + strand, within BACOVA_04356at 243.707 kb on - strand, within BACOVA_04356at 243.713 kb on + strand, within BACOVA_04356at 243.713 kb on + strand, within BACOVA_04356at 243.721 kb on - strand, within BACOVA_04356at 243.782 kb on + strand, within BACOVA_04356at 243.792 kb on + strand, within BACOVA_04356at 243.792 kb on + strand, within BACOVA_04356at 243.793 kb on - strand, within BACOVA_04356at 243.795 kb on - strand, within BACOVA_04356at 243.795 kb on - strand, within BACOVA_04356at 243.797 kb on - strand, within BACOVA_04356at 243.797 kb on - strand, within BACOVA_04356at 243.803 kb on + strand, within BACOVA_04356at 243.803 kb on + strand, within BACOVA_04356at 243.846 kb on - strand, within BACOVA_04356at 243.857 kb on - strand, within BACOVA_04356at 243.912 kb on + strand, within BACOVA_04356at 243.930 kb on + strand, within BACOVA_04356at 244.002 kb on + strand, within BACOVA_04356at 244.002 kb on + strand, within BACOVA_04356at 244.003 kb on - strand, within BACOVA_04356at 244.003 kb on - strand, within BACOVA_04356at 244.003 kb on - strand, within BACOVA_04356at 244.005 kb on - strand, within BACOVA_04356at 244.027 kb on - strand, within BACOVA_04356at 244.128 kb on + strand, within BACOVA_04356at 244.128 kb on + strand, within BACOVA_04356at 244.168 kb on + strand, within BACOVA_04356at 244.169 kb on - strand, within BACOVA_04356at 244.183 kb on + strand, within BACOVA_04356at 244.187 kb on - strand, within BACOVA_04356at 244.192 kb on + strand, within BACOVA_04356at 244.193 kb on - strand, within BACOVA_04356at 244.193 kb on - strand, within BACOVA_04356at 244.254 kb on + strand, within BACOVA_04356at 244.255 kb on - strand, within BACOVA_04356at 244.265 kb on - strand, within BACOVA_04356at 244.265 kb on - strand, within BACOVA_04356at 244.353 kb on - strand, within BACOVA_04356at 244.353 kb on - strand, within BACOVA_04356at 244.353 kb on - strand, within BACOVA_04356at 244.353 kb on - strand, within BACOVA_04356at 244.384 kb on + strand, within BACOVA_04356at 244.393 kb on + strand, within BACOVA_04356at 244.397 kb on - strand, within BACOVA_04356at 244.408 kb on - strand, within BACOVA_04356at 244.413 kb on - strand, within BACOVA_04356at 244.485 kb on - strand, within BACOVA_04356at 244.507 kb on - strand, within BACOVA_04356at 244.518 kb on + strand, within BACOVA_04356at 244.549 kb on - strand, within BACOVA_04356at 244.566 kb on + strand, within BACOVA_04356at 244.587 kb on + strand, within BACOVA_04356at 244.588 kb on - strand, within BACOVA_04356at 244.596 kb on + strand, within BACOVA_04356at 244.629 kb on + strand, within BACOVA_04356at 244.639 kb on + strand, within BACOVA_04356at 244.656 kb on + strand, within BACOVA_04356at 244.659 kb on + strand, within BACOVA_04356at 244.660 kb on - strand, within BACOVA_04356at 244.660 kb on - strand, within BACOVA_04356at 244.694 kb on - strand, within BACOVA_04356at 244.705 kb on - strand, within BACOVA_04356at 244.705 kb on - strand, within BACOVA_04356at 244.717 kb on - strand, within BACOVA_04356at 244.744 kb on + strandat 244.856 kb on - strandat 244.943 kb on - strandat 244.954 kb on + strandat 244.954 kb on + strandat 245.023 kb on + strandat 245.029 kb on + strandat 245.029 kb on + strandat 245.030 kb on - strandat 245.030 kb on - strandat 245.033 kb on - strandat 245.100 kb on + strand, within BACOVA_04357at 245.123 kb on + strand, within BACOVA_04357at 245.296 kb on + strand, within BACOVA_04357at 245.301 kb on + strand, within BACOVA_04357at 245.324 kb on + strand, within BACOVA_04357at 245.379 kb on + strand, within BACOVA_04357at 245.384 kb on + strand, within BACOVA_04357at 245.385 kb on - strand, within BACOVA_04357at 245.441 kb on - strand, within BACOVA_04357at 245.469 kb on - strand, within BACOVA_04357at 245.471 kb on - strand, within BACOVA_04357at 245.690 kb on - strand, within BACOVA_04357at 245.690 kb on - strand, within BACOVA_04357at 245.743 kb on + strand, within BACOVA_04357at 245.744 kb on - strand, within BACOVA_04357at 245.763 kb on + strand, within BACOVA_04357at 245.763 kb on + strand, within BACOVA_04357at 245.763 kb on + strand, within BACOVA_04357at 245.763 kb on + strand, within BACOVA_04357at 245.764 kb on - strand, within BACOVA_04357at 245.786 kb on + strand, within BACOVA_04357at 245.787 kb on - strand, within BACOVA_04357at 245.822 kb on - strand, within BACOVA_04357at 245.822 kb on - strand, within BACOVA_04357at 245.840 kb on - strand, within BACOVA_04357

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media
remove
242,686 + BACOVA_04355 0.51 +0.2
242,699 + BACOVA_04355 0.52 -0.5
242,700 - BACOVA_04355 0.52 -0.7
242,711 - BACOVA_04355 0.53 +0.5
242,764 - BACOVA_04355 0.57 +0.6
242,770 + BACOVA_04355 0.58 +1.0
242,770 + BACOVA_04355 0.58 +0.1
242,772 + BACOVA_04355 0.58 -0.0
242,772 + BACOVA_04355 0.58 +0.5
242,773 - BACOVA_04355 0.58 -0.4
242,773 - BACOVA_04355 0.58 -1.2
242,786 - BACOVA_04355 0.59 +2.0
242,817 - BACOVA_04355 0.61 -2.4
242,929 + BACOVA_04355 0.71 -1.6
242,967 - BACOVA_04355 0.74 +0.7
242,986 + BACOVA_04355 0.76 -1.0
242,987 - BACOVA_04355 0.76 -0.6
242,987 - BACOVA_04355 0.76 +1.0
242,988 + BACOVA_04355 0.76 -0.6
242,996 - BACOVA_04355 0.76 +0.4
243,091 + BACOVA_04355 0.84 +0.0
243,091 + BACOVA_04355 0.84 -0.7
243,091 + BACOVA_04355 0.84 +0.8
243,092 - BACOVA_04355 0.84 -0.6
243,116 + BACOVA_04355 0.86 -0.3
243,216 + +0.9
243,217 - -0.0
243,249 + -0.4
243,272 - +0.6
243,274 - -1.7
243,276 + -2.4
243,277 - +1.2
243,277 - -0.5
243,280 + +2.0
243,281 - +1.8
243,281 - +0.5
243,292 + -1.7
243,295 + +0.1
243,295 + -1.4
243,306 - -0.4
243,316 + +0.7
243,323 - +0.2
243,327 - +0.0
243,329 - +0.4
243,363 - -1.8
243,394 + +1.5
243,409 + -0.6
243,409 + -1.7
243,440 + -0.9
243,462 + +1.1
243,482 + +0.8
243,483 - +1.0
243,485 - -0.4
243,485 - -0.2
243,498 - -0.0
243,498 - +0.2
243,511 - +1.4
243,515 + +0.5
243,556 + -1.4
243,575 + +0.2
243,575 + +0.3
243,660 - -0.4
243,676 - +0.4
243,703 - BACOVA_04356 0.10 +0.4
243,703 - BACOVA_04356 0.10 -1.0
243,706 + BACOVA_04356 0.10 +0.5
243,707 - BACOVA_04356 0.10 -0.0
243,713 + BACOVA_04356 0.11 +0.5
243,713 + BACOVA_04356 0.11 -0.8
243,721 - BACOVA_04356 0.12 -0.2
243,782 + BACOVA_04356 0.16 +0.2
243,792 + BACOVA_04356 0.17 -2.0
243,792 + BACOVA_04356 0.17 +1.5
243,793 - BACOVA_04356 0.17 +0.9
243,795 - BACOVA_04356 0.17 +0.5
243,795 - BACOVA_04356 0.17 -0.4
243,797 - BACOVA_04356 0.17 -2.2
243,797 - BACOVA_04356 0.17 +1.0
243,803 + BACOVA_04356 0.18 -1.3
243,803 + BACOVA_04356 0.18 -0.2
243,846 - BACOVA_04356 0.21 -0.4
243,857 - BACOVA_04356 0.22 -1.2
243,912 + BACOVA_04356 0.26 -0.5
243,930 + BACOVA_04356 0.28 -0.0
244,002 + BACOVA_04356 0.33 +1.5
244,002 + BACOVA_04356 0.33 +0.5
244,003 - BACOVA_04356 0.34 +0.7
244,003 - BACOVA_04356 0.34 -0.7
244,003 - BACOVA_04356 0.34 -0.8
244,005 - BACOVA_04356 0.34 +0.6
244,027 - BACOVA_04356 0.35 +1.2
244,128 + BACOVA_04356 0.43 +0.4
244,128 + BACOVA_04356 0.43 -0.3
244,168 + BACOVA_04356 0.46 -2.0
244,169 - BACOVA_04356 0.47 -1.6
244,183 + BACOVA_04356 0.48 +0.4
244,187 - BACOVA_04356 0.48 -1.0
244,192 + BACOVA_04356 0.48 +0.0
244,193 - BACOVA_04356 0.48 +0.5
244,193 - BACOVA_04356 0.48 -0.2
244,254 + BACOVA_04356 0.53 -0.5
244,255 - BACOVA_04356 0.53 -0.6
244,265 - BACOVA_04356 0.54 -0.7
244,265 - BACOVA_04356 0.54 +0.5
244,353 - BACOVA_04356 0.61 -0.9
244,353 - BACOVA_04356 0.61 +0.5
244,353 - BACOVA_04356 0.61 +0.5
244,353 - BACOVA_04356 0.61 -1.6
244,384 + BACOVA_04356 0.63 +1.4
244,393 + BACOVA_04356 0.64 -0.5
244,397 - BACOVA_04356 0.64 -0.8
244,408 - BACOVA_04356 0.65 +0.2
244,413 - BACOVA_04356 0.66 +0.1
244,485 - BACOVA_04356 0.71 -0.6
244,507 - BACOVA_04356 0.73 -0.4
244,518 + BACOVA_04356 0.74 -1.8
244,549 - BACOVA_04356 0.76 -0.0
244,566 + BACOVA_04356 0.78 +1.0
244,587 + BACOVA_04356 0.79 +1.0
244,588 - BACOVA_04356 0.79 +0.2
244,596 + BACOVA_04356 0.80 +0.2
244,629 + BACOVA_04356 0.83 -1.4
244,639 + BACOVA_04356 0.83 -0.8
244,656 + BACOVA_04356 0.85 -1.8
244,659 + BACOVA_04356 0.85 -0.4
244,660 - BACOVA_04356 0.85 -2.1
244,660 - BACOVA_04356 0.85 -1.8
244,694 - BACOVA_04356 0.88 +1.6
244,705 - BACOVA_04356 0.88 -0.6
244,705 - BACOVA_04356 0.88 +0.5
244,717 - BACOVA_04356 0.89 +1.0
244,744 + -2.3
244,856 - +0.2
244,943 - -1.5
244,954 + -0.5
244,954 + +0.1
245,023 + -1.6
245,029 + -0.4
245,029 + +0.3
245,030 - -0.7
245,030 - -0.2
245,033 - +0.5
245,100 + BACOVA_04357 0.11 +0.5
245,123 + BACOVA_04357 0.13 +0.4
245,296 + BACOVA_04357 0.22 +0.5
245,301 + BACOVA_04357 0.22 +0.4
245,324 + BACOVA_04357 0.24 +0.6
245,379 + BACOVA_04357 0.27 -1.4
245,384 + BACOVA_04357 0.27 -0.0
245,385 - BACOVA_04357 0.27 -2.5
245,441 - BACOVA_04357 0.30 -1.8
245,469 - BACOVA_04357 0.32 -0.0
245,471 - BACOVA_04357 0.32 -0.7
245,690 - BACOVA_04357 0.44 +0.0
245,690 - BACOVA_04357 0.44 +0.4
245,743 + BACOVA_04357 0.47 +0.4
245,744 - BACOVA_04357 0.47 -0.0
245,763 + BACOVA_04357 0.48 +1.0
245,763 + BACOVA_04357 0.48 -1.0
245,763 + BACOVA_04357 0.48 +1.0
245,763 + BACOVA_04357 0.48 -0.8
245,764 - BACOVA_04357 0.48 -0.8
245,786 + BACOVA_04357 0.49 +0.5
245,787 - BACOVA_04357 0.49 -0.5
245,822 - BACOVA_04357 0.51 +0.3
245,822 - BACOVA_04357 0.51 -0.6
245,840 - BACOVA_04357 0.52 +0.4

Or see this region's nucleotide sequence