Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04342

Experiment: Peptone 2.5 mg/mL (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04341 and BACOVA_04342 are separated by 39 nucleotidesBACOVA_04342 and BACOVA_04343 are separated by 104 nucleotides BACOVA_04341: BACOVA_04341 - histidine kinase A domain protein, at 228,966 to 230,921 _04341 BACOVA_04342: BACOVA_04342 - MATE efflux family protein, at 230,961 to 232,283 _04342 BACOVA_04343: BACOVA_04343 - signal recognition particle protein, at 232,388 to 233,710 _04343 Position (kb) 230 231 232 233Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 230.020 kb on - strand, within BACOVA_04341at 230.060 kb on - strand, within BACOVA_04341at 230.216 kb on + strand, within BACOVA_04341at 230.217 kb on - strand, within BACOVA_04341at 230.322 kb on + strand, within BACOVA_04341at 230.322 kb on + strand, within BACOVA_04341at 230.322 kb on + strand, within BACOVA_04341at 230.322 kb on + strand, within BACOVA_04341at 230.323 kb on - strand, within BACOVA_04341at 230.323 kb on - strand, within BACOVA_04341at 230.325 kb on - strand, within BACOVA_04341at 230.387 kb on + strand, within BACOVA_04341at 230.388 kb on - strand, within BACOVA_04341at 230.413 kb on - strand, within BACOVA_04341at 230.413 kb on - strand, within BACOVA_04341at 230.521 kb on - strand, within BACOVA_04341at 230.531 kb on + strand, within BACOVA_04341at 230.537 kb on - strand, within BACOVA_04341at 230.633 kb on + strand, within BACOVA_04341at 230.634 kb on - strand, within BACOVA_04341at 230.635 kb on + strand, within BACOVA_04341at 230.636 kb on - strand, within BACOVA_04341at 230.665 kb on + strand, within BACOVA_04341at 230.666 kb on - strand, within BACOVA_04341at 230.810 kb on + strandat 230.819 kb on - strandat 230.824 kb on + strandat 230.847 kb on + strandat 230.848 kb on - strandat 230.895 kb on + strandat 230.956 kb on + strandat 230.956 kb on + strandat 230.956 kb on + strandat 230.957 kb on - strandat 230.960 kb on + strandat 230.961 kb on - strandat 230.964 kb on + strandat 231.002 kb on - strandat 231.003 kb on - strandat 231.004 kb on + strandat 231.008 kb on - strandat 231.109 kb on - strand, within BACOVA_04342at 231.109 kb on - strand, within BACOVA_04342at 231.110 kb on + strand, within BACOVA_04342at 231.112 kb on + strand, within BACOVA_04342at 231.112 kb on + strand, within BACOVA_04342at 231.112 kb on + strand, within BACOVA_04342at 231.112 kb on + strand, within BACOVA_04342at 231.113 kb on - strand, within BACOVA_04342at 231.113 kb on - strand, within BACOVA_04342at 231.157 kb on + strand, within BACOVA_04342at 231.158 kb on - strand, within BACOVA_04342at 231.318 kb on + strand, within BACOVA_04342at 231.354 kb on + strand, within BACOVA_04342at 231.399 kb on + strand, within BACOVA_04342at 231.440 kb on + strand, within BACOVA_04342at 231.441 kb on - strand, within BACOVA_04342at 231.441 kb on - strand, within BACOVA_04342at 231.458 kb on + strand, within BACOVA_04342at 231.474 kb on + strand, within BACOVA_04342at 231.474 kb on + strand, within BACOVA_04342at 231.475 kb on - strand, within BACOVA_04342at 231.475 kb on - strand, within BACOVA_04342at 231.530 kb on + strand, within BACOVA_04342at 231.579 kb on + strand, within BACOVA_04342at 231.579 kb on + strand, within BACOVA_04342at 231.579 kb on + strand, within BACOVA_04342at 231.579 kb on + strand, within BACOVA_04342at 231.580 kb on - strand, within BACOVA_04342at 231.580 kb on - strand, within BACOVA_04342at 231.581 kb on + strand, within BACOVA_04342at 231.582 kb on - strand, within BACOVA_04342at 231.582 kb on - strand, within BACOVA_04342at 231.582 kb on - strand, within BACOVA_04342at 231.585 kb on + strand, within BACOVA_04342at 231.586 kb on - strand, within BACOVA_04342at 231.609 kb on + strand, within BACOVA_04342at 231.662 kb on + strand, within BACOVA_04342at 231.666 kb on - strand, within BACOVA_04342at 231.666 kb on - strand, within BACOVA_04342at 231.690 kb on + strand, within BACOVA_04342at 231.690 kb on + strand, within BACOVA_04342at 231.691 kb on - strand, within BACOVA_04342at 231.782 kb on + strand, within BACOVA_04342at 231.783 kb on - strand, within BACOVA_04342at 231.786 kb on + strand, within BACOVA_04342at 231.786 kb on + strand, within BACOVA_04342at 231.794 kb on - strand, within BACOVA_04342at 231.852 kb on - strand, within BACOVA_04342at 231.852 kb on - strand, within BACOVA_04342at 231.893 kb on + strand, within BACOVA_04342at 231.976 kb on - strand, within BACOVA_04342at 232.024 kb on + strand, within BACOVA_04342at 232.095 kb on - strand, within BACOVA_04342at 232.130 kb on + strand, within BACOVA_04342at 232.131 kb on - strand, within BACOVA_04342at 232.147 kb on - strand, within BACOVA_04342at 232.215 kb on + strandat 232.239 kb on + strandat 232.239 kb on + strandat 232.241 kb on + strandat 232.242 kb on - strandat 232.246 kb on - strandat 232.281 kb on + strandat 232.285 kb on + strandat 232.354 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Peptone 2.5 mg/mL (C) complex media
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230,020 - BACOVA_04341 0.54 -0.0
230,060 - BACOVA_04341 0.56 +1.0
230,216 + BACOVA_04341 0.64 +1.1
230,217 - BACOVA_04341 0.64 +0.4
230,322 + BACOVA_04341 0.69 -0.0
230,322 + BACOVA_04341 0.69 -0.4
230,322 + BACOVA_04341 0.69 +0.4
230,322 + BACOVA_04341 0.69 -0.0
230,323 - BACOVA_04341 0.69 +0.4
230,323 - BACOVA_04341 0.69 -0.5
230,325 - BACOVA_04341 0.69 +2.0
230,387 + BACOVA_04341 0.73 -0.7
230,388 - BACOVA_04341 0.73 +1.7
230,413 - BACOVA_04341 0.74 -0.6
230,413 - BACOVA_04341 0.74 -0.6
230,521 - BACOVA_04341 0.79 +0.2
230,531 + BACOVA_04341 0.80 -0.5
230,537 - BACOVA_04341 0.80 -0.5
230,633 + BACOVA_04341 0.85 -0.0
230,634 - BACOVA_04341 0.85 +1.0
230,635 + BACOVA_04341 0.85 +1.0
230,636 - BACOVA_04341 0.85 +0.5
230,665 + BACOVA_04341 0.87 +0.4
230,666 - BACOVA_04341 0.87 +0.6
230,810 + -3.0
230,819 - +0.6
230,824 + -1.4
230,847 + -1.6
230,848 - -0.7
230,895 + +1.5
230,956 + +0.0
230,956 + +0.0
230,956 + +1.5
230,957 - +0.7
230,960 + -1.0
230,961 - +1.6
230,964 + +1.8
231,002 - -0.9
231,003 - -0.8
231,004 + +0.1
231,008 - -0.8
231,109 - BACOVA_04342 0.11 -0.2
231,109 - BACOVA_04342 0.11 -0.6
231,110 + BACOVA_04342 0.11 -0.3
231,112 + BACOVA_04342 0.11 +3.0
231,112 + BACOVA_04342 0.11 -1.4
231,112 + BACOVA_04342 0.11 +2.8
231,112 + BACOVA_04342 0.11 -0.0
231,113 - BACOVA_04342 0.11 +1.1
231,113 - BACOVA_04342 0.11 -1.4
231,157 + BACOVA_04342 0.15 -1.4
231,158 - BACOVA_04342 0.15 +0.1
231,318 + BACOVA_04342 0.27 -0.4
231,354 + BACOVA_04342 0.30 -0.6
231,399 + BACOVA_04342 0.33 -1.6
231,440 + BACOVA_04342 0.36 +2.8
231,441 - BACOVA_04342 0.36 +0.5
231,441 - BACOVA_04342 0.36 -0.6
231,458 + BACOVA_04342 0.38 -0.2
231,474 + BACOVA_04342 0.39 +0.4
231,474 + BACOVA_04342 0.39 +1.8
231,475 - BACOVA_04342 0.39 +0.6
231,475 - BACOVA_04342 0.39 -0.8
231,530 + BACOVA_04342 0.43 +0.9
231,579 + BACOVA_04342 0.47 -1.4
231,579 + BACOVA_04342 0.47 +1.0
231,579 + BACOVA_04342 0.47 -1.4
231,579 + BACOVA_04342 0.47 +0.1
231,580 - BACOVA_04342 0.47 -0.4
231,580 - BACOVA_04342 0.47 -0.0
231,581 + BACOVA_04342 0.47 +1.5
231,582 - BACOVA_04342 0.47 -1.6
231,582 - BACOVA_04342 0.47 +0.2
231,582 - BACOVA_04342 0.47 +0.7
231,585 + BACOVA_04342 0.47 -1.0
231,586 - BACOVA_04342 0.47 -0.3
231,609 + BACOVA_04342 0.49 +2.5
231,662 + BACOVA_04342 0.53 +0.8
231,666 - BACOVA_04342 0.53 +0.5
231,666 - BACOVA_04342 0.53 +0.5
231,690 + BACOVA_04342 0.55 +0.6
231,690 + BACOVA_04342 0.55 -0.2
231,691 - BACOVA_04342 0.55 +0.2
231,782 + BACOVA_04342 0.62 -0.0
231,783 - BACOVA_04342 0.62 +0.3
231,786 + BACOVA_04342 0.62 +0.0
231,786 + BACOVA_04342 0.62 +0.4
231,794 - BACOVA_04342 0.63 -0.4
231,852 - BACOVA_04342 0.67 -1.4
231,852 - BACOVA_04342 0.67 -0.1
231,893 + BACOVA_04342 0.70 +0.1
231,976 - BACOVA_04342 0.77 -0.2
232,024 + BACOVA_04342 0.80 -1.8
232,095 - BACOVA_04342 0.86 -0.3
232,130 + BACOVA_04342 0.88 -2.0
232,131 - BACOVA_04342 0.88 -1.0
232,147 - BACOVA_04342 0.90 -0.0
232,215 + -0.0
232,239 + -0.6
232,239 + +1.2
232,241 + -1.2
232,242 - -0.0
232,246 - -0.7
232,281 + -0.6
232,285 + -0.9
232,354 + -0.9

Or see this region's nucleotide sequence